Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma70 from Burkholderia phytofirmans PsJN

Subject, 247 a.a., RNA polymerase sigma factor, FliA/WhiG family from Sphingomonas koreensis DSMZ 15582

 Score =  122 bits (307), Expect = 5e-33
 Identities = 69/222 (31%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 13  VLTKYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAAGRYKEDQGAQFETYASQRI 72
           ++ K+ PLVRRL   +   M + +D++DL+Q G++ L++AA  +++     F+ Y   R+
Sbjct: 27  LVRKHMPLVRRLAWHVHGSMSSLIDVEDLVQIGLVALVEAAASFEDRGLVSFDQYLQTRV 86

Query: 73  RGAMLDELRSNDWLPRSLRRTSREVETAVHKVEQNLGRSASETEIAEHLQMPLDEYQSML 132
           RGAM+DELR    + R   +  R    A+  +    G+   E  +A  L + +++ +S  
Sbjct: 87  RGAMIDELRRQATITRGAMKRRRVYNDAIAALTDEHGKRPDEAAVASRLGVTIEKLRS-- 144

Query: 133 QDLHGSQLIYYEDFDRSADDE-PFLDRYCVDHSDPLSALLDDSLRSALVEAIDRLPDREK 191
            D   ++ + ++  D    DE P+   +  D       L D   R AL+  I  LP++E+
Sbjct: 145 -DYASAEAVRFDSIDEVYSDEGPW---FMSDEPSAFDQLADADQREALIATISELPEKEQ 200

Query: 192 LLMSLYYERGMNLREIGAVMEVSESRVCQLHSQAVARLRTRL 233
           L++ LYY   +NL EIG V+ V  +RVCQ+   A  RL+  L
Sbjct: 201 LVIQLYYVEELNLEEIGQVLGVGAARVCQIKKSAHDRLKKGL 242