Pairwise Alignments

Query, 1412 a.a., DNA-directed RNA polymerase subunit beta' from Burkholderia phytofirmans PsJN

Subject, 1389 a.a., DNA-directed RNA polymerase subunit beta' from Azospirillum brasilense Sp245

 Score = 1716 bits (4445), Expect = 0.0
 Identities = 869/1388 (62%), Positives = 1087/1388 (78%), Gaps = 28/1388 (2%)

Query: 1    MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60
            M  L+++F QVQ P+ FD I+I +ASP++IRSWSFGE+KKPETINYRTFKPERDGLFCA+
Sbjct: 1    MNELMNIFGQVQGPQSFDQIRIQIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL 120
            IFGPIKDYECLCGKYKR+K+RG+ICEKCGVEVTL+KVRRERMGHIELASPVAHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL 120

Query: 121  PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYG-DEFRAE 179
            PSR+G++LDMTL+D+ER+LYFE YVVI+PG+TPLK  Q+++EE++ +  +EYG D F A 
Sbjct: 121  PSRIGLLLDMTLKDLERILYFENYVVIEPGLTPLKLHQLLSEEEFVSAQDEYGEDAFTAS 180

Query: 180  MGAEGVRELLRAINIDEQVEMLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVL 239
            +GAE +R +L A++++E+ +  R EL++T SEAK KK  KRLK+++AF  S  +P+WM+L
Sbjct: 181  IGAEALRIMLSALDMEEEKKTCREELRDTSSEAKRKKLVKRLKLIDAFLSSQSRPEWMIL 240

Query: 240  EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML 299
            EV+PV+PPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+ELKAP+IIVRNEKRML
Sbjct: 241  EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPDIIVRNEKRML 300

Query: 300  QEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP 359
            QEAVD+L DNGRRG+ +TGANKRPLKSL+DM+KGK GRFRQNLLGKRVDYSGRSVIVVGP
Sbjct: 301  QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP 360

Query: 360  TLKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREH 419
             LKLHQCGLPK MALELFKPFI+ KLE+ G+A+TIKAAK+ VE + P VWDILEEVIREH
Sbjct: 361  ELKLHQCGLPKKMALELFKPFIYAKLELYGLASTIKAAKRMVEKERPEVWDILEEVIREH 420

Query: 420  PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME 479
            PVMLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVC AFNADFDGDQMAVHVPLSLEAQ+E
Sbjct: 421  PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE 480

Query: 480  ARTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAVNAKGEGLTFTGVSEALRAYEN 539
            AR LM+++NN+L PANG P IVPSQDIVLGLYY T +    KGEG+TF  V E  +A + 
Sbjct: 481  ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYITMDRPGEKGEGMTFANVGEIEQALDA 540

Query: 540  KEVELASRVNVRITEMVHNEDKSEGAPAFVPKITLYPTTVGRAILSEILP--PGLPFSVL 597
            K V L ++V  R   +  N D+         KI++  TT GR +LSEILP  P +PF+++
Sbjct: 541  KVVTLHAKVKARYKGVDENGDE---------KISIVETTPGRMLLSEILPRNPAVPFALI 591

Query: 598  NKPLKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKET 657
            N+ L KK++  +I+  +R CG +ETVIFAD+LM+ GF  A RAGIS   DDM++P  K+ 
Sbjct: 592  NRLLTKKDVGNVIDAVYRHCGQKETVIFADRLMKLGFGHACRAGISFGKDDMVIPEAKKK 651

Query: 658  IVGDAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLS-TEPVTDRDG 716
            +V D+ ++VKE+++QY+ GL+T  E+YN VVD+WS  +E V   MM+ +S T+P      
Sbjct: 652  LVNDSKERVKEFEQQYLDGLITQGEKYNKVVDVWSECTEKVATEMMKVISDTKP------ 705

Query: 717  NETRQESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ 776
                 +  NS+YMMA SGARGSA QIRQLAGMRGLMAKP G IIETPI +NF+EGL VL+
Sbjct: 706  ----GKPVNSVYMMAHSGARGSAAQIRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLE 761

Query: 777  YFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEV 836
            YF STHGARKGLADTALKTANSGYLTRRLVDV QD ++VE DCGT  G+ +KA+++GGEV
Sbjct: 762  YFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDAIIVETDCGTDKGITVKAVIDGGEV 821

Query: 837  VEALRDRILGRVTVADVVNPESQETLYETGTLLDEDAVEEIERLGIDEVRVRTPLTCETR 896
            +  L DRILGR  V D+++P + E +     L+DE  V+ IER GID V +R+ LTCET+
Sbjct: 822  ISPLGDRILGRTVVGDLIDPLNGELIVPNAGLIDEPTVDRIERSGIDSVMIRSVLTCETK 881

Query: 897  YGLCAACYGRDLGRGSSVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVE 956
             G+CA CYGRDL RG+ VNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAA R A  S VE
Sbjct: 882  DGVCAKCYGRDLARGTLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSQVE 941

Query: 957  AKSNGTVRFTATMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQ 1016
            A  + TVR       V N+    +V+ RS E ++ D+ GRER RH+VPYGA LL  +G +
Sbjct: 942  AAFDATVRI-HNRNVVINSSNIPVVMGRSTEVILLDEQGRERARHRVPYGAKLLADEGVK 1000

Query: 1017 IKAGTQLATWDPMTRPIITEWGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQ 1076
            ++ G +LA WDP T PIITE  GT  + ++ EG+++ + +D+ TG+S+ VV+D +++   
Sbjct: 1001 VERGQKLAEWDPYTLPIITEREGTAHYVDLVEGISMREVMDEATGISSKVVVDWRQQPRG 1060

Query: 1077 ASKTVRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPVESQ 1136
            A   ++P++ L D  GE + + N   + +    V A+++V++G  V+ G+VLARIP ES 
Sbjct: 1061 AD--LKPRITLRDERGEIITLANGLEA-RYFMSVDAILSVENGAHVRAGDVLARIPRESS 1117

Query: 1137 KTRDITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVI-TDLDGNQHEFL 1195
            KTRDITGGLPRVAELFEAR PKD  I++++ G   FGKD K K+R+V+  D  G++ E+L
Sbjct: 1118 KTRDITGGLPRVAELFEARRPKDFAIISDLDGRVEFGKDYKTKRRIVVRNDETGDEREYL 1177

Query: 1196 IAKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKIN 1255
            I K K + V +G  V +G++++DG   PHDIL + G+EAL+ Y+++E+QDVYRLQGVKIN
Sbjct: 1178 IPKGKHISVQEGDYVQRGDLLMDGNPVPHDILSVMGVEALANYLINEIQDVYRLQGVKIN 1237

Query: 1256 DKHIEVIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENVLLGI 1315
            DKHIEVIVRQML++V+ITD G+T F+ GEQV+R +  +EN++ +AE  +PA    VL GI
Sbjct: 1238 DKHIEVIVRQMLQKVEITDAGETTFLVGEQVDRQEFDEENEKTVAEGLKPAAGHPVLQGI 1297

Query: 1316 TKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKAR 1375
            TKASL T SFISAASFQETTRVLTEAA+ GK D+L GLKENVIVGRLIPAGTG   ++ +
Sbjct: 1298 TKASLQTRSFISAASFQETTRVLTEAAVSGKTDNLEGLKENVIVGRLIPAGTGSVVNRLK 1357

Query: 1376 KSKELSDR 1383
            +     DR
Sbjct: 1358 QIAAERDR 1365