Pairwise Alignments

Query, 1412 a.a., DNA-directed RNA polymerase subunit beta' from Burkholderia phytofirmans PsJN

Subject, 1404 a.a., DNA-directed RNA polymerase subunit beta from Marinobacter adhaerens HP15

 Score = 1859 bits (4816), Expect = 0.0
 Identities = 950/1403 (67%), Positives = 1123/1403 (80%), Gaps = 17/1403 (1%)

Query: 1    MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60
            MK LL+L K   Q + FDAI+IGLASPD IRSWSFGEVKKPETINYRTFKPERDGLFCAK
Sbjct: 1    MKDLLNLLKSQNQSKEFDAIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL 120
            IFGPIKDYECLCGKYKRLKHRGVICEKCGVEV LA VRRERMGHIELASPVAHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVALASVRRERMGHIELASPVAHIWFLKSL 120

Query: 121  PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM 180
            PSR+G++LDMTLRDIERVLYFE+++VIDPGMT L+  Q++ +E YY  +EE+GDEF A M
Sbjct: 121  PSRIGLMLDMTLRDIERVLYFESFIVIDPGMTTLEKGQLLNDEQYYEALEEFGDEFDARM 180

Query: 181  GAEGVRELLRAINIDEQVEMLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVLE 240
            GAE V+ELL  I++ E+V+ LR E+  T SE KIKK++KRLK+LEAF  SG KP  MV+ 
Sbjct: 181  GAEAVKELLEGIDLQEEVDALREEIPQTNSETKIKKFSKRLKILEAFLYSGNKPGDMVMT 240

Query: 241  VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ 300
            VLPVLPP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLEL AP+IIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ 300

Query: 301  EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT 360
            EAVD+LLDNGRRG+A+TG NKRPLKSLADMIKGK GRFRQNLLGKRVDYSGRSVIVVGP 
Sbjct: 301  EAVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY 360

Query: 361  LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP 420
            L+LHQCGLPK MALELFKPFIF+KLE  G+ATTIKAAKK VE +  VVWDIL+EVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKMVEREEGVVWDILDEVIREHP 420

Query: 421  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA 480
            +MLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL+LEAQ+EA
Sbjct: 421  IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAVNAKGEGLTFTGVSEALRAYENK 540
            R LM+++NNVL PANG+P IVPSQD+VLGLYY TRE  +A GEG+ F  V EA RAY   
Sbjct: 481  RALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTRERKSALGEGMVFADVKEAHRAYGAG 540

Query: 541  EVELASRVNVRITEMVHNEDKSEGAPAFVPKITLYPTTVGRAILSEILPPGLPFSVLNKP 600
            +V+L + V VR+ E+   ED S        +  +  TTVGRA+L +I+P GL + ++NKP
Sbjct: 541  KVDLQAIVKVRVKEVAIAEDGSR-----TEQYKIVDTTVGRALLFDIVPDGLSYELVNKP 595

Query: 601  LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG 660
            + KK IS LINT +R  GL++TVIFADQLM  G+  AT +GISI  +D  +PP+K  +V 
Sbjct: 596  MVKKAISNLINTCYRDAGLKDTVIFADQLMYMGYHYATVSGISIGFNDFEIPPEKYELVD 655

Query: 661  DAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTE--------PVT 712
             A+ +VK+ + QY SGL+T  E+YN V+DIWS  ++ V KAMME+L+ E        PV 
Sbjct: 656  AASAEVKDIETQYASGLLTQGEKYNKVIDIWSRANDKVSKAMMERLAKEQVIGPDGQPVK 715

Query: 713  DRDGNETRQESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGL 772
              DG    QESFNS+YMMADSGARGSA QIRQLAGMRGLMAKPDGSIIETPITANFREGL
Sbjct: 716  GEDGEYLMQESFNSVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGL 775

Query: 773  NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVE 832
            NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV+QDLVV E DCGT  G+ M   +E
Sbjct: 776  NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVSQDLVVTEPDCGTDEGLLMTPHIE 835

Query: 833  GGEVVEALRDRILGRVTVADVVNP-ESQETLYETGTLLDEDAVEEIERLGIDEVRVRTPL 891
            GG+VV  L DR+LGRVT  D   P +    + E GTLLDE AVE +ER G+DEV VR+ +
Sbjct: 836  GGDVVVPLGDRVLGRVTARDAFTPTDKDNAVIEAGTLLDEKAVETLERAGVDEVWVRSAI 895

Query: 892  TCETRYGLCAACYGRDLGRGSSVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAV 951
            TCETR+G+C+ CYGRDL RG  VNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRA+ 
Sbjct: 896  TCETRHGICSKCYGRDLARGHEVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASA 955

Query: 952  ASSVEAKSNGTVRFTATMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQ 1011
              +++ K  GTVR    M+ +  A G  +VISRS    I DD GRERE +K+PYGA L  
Sbjct: 956  VDNIQVKHGGTVRL-HNMKSIEKADGTLVVISRSSALAIADDQGREREWYKLPYGAVLSV 1014

Query: 1012 LDGAQIKAGTQLATWDPMTRPIITEWGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVK 1071
              G  ++AG  +A WDP T PII E GGT KF N+++G+TV  Q D++TGLST+ VID K
Sbjct: 1015 KHGDAVEAGVVVAKWDPHTHPIIAEAGGTAKFVNMDQGITVRTQTDELTGLSTMEVIDSK 1074

Query: 1072 RRGSQASKTVRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARI 1131
             R + A K +RP ++L+D  GEEV++P    ++       AL+T+ +G ++++G+V+ARI
Sbjct: 1075 ERPA-AGKDIRPAIQLIDEKGEEVELPGGGTAI-FFLPANALVTMANGARIELGDVVARI 1132

Query: 1132 PVESQKTRDITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLDGNQ 1191
            P ES KTRDITGGLPRVA+LFEAR PK++ ILAE++G  SFGK+TKGK+RLVIT  DG+ 
Sbjct: 1133 PQESSKTRDITGGLPRVADLFEARRPKESSILAEISGMVSFGKETKGKKRLVITPKDGDA 1192

Query: 1192 HEFLIAKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQG 1251
            +E LI K +Q+ V +G+ V KGE+I DGP++PHDILRL G+  L++YI +E+QDVYRLQG
Sbjct: 1193 YEVLIPKHRQLNVFEGETVEKGEVISDGPSNPHDILRLLGVVELAKYITNEIQDVYRLQG 1252

Query: 1252 VKINDKHIEVIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENV 1311
            V INDKHIEVIVRQMLR+V+ITD GDT  + G+QVE + +L+EN++  A DK PA +E +
Sbjct: 1253 VVINDKHIEVIVRQMLRKVEITDPGDTTLLSGDQVEITQVLEENEKADAADKEPARFERL 1312

Query: 1312 LLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAF 1371
            LLGITKASL+T+SFISAASFQETTRVLTE A+ GKRD LRGLKENV+VGRLIPAGTGLA+
Sbjct: 1313 LLGITKASLATESFISAASFQETTRVLTEGAVTGKRDYLRGLKENVVVGRLIPAGTGLAY 1372

Query: 1372 HKARKSKELSDRERFDQIAAEES 1394
            H  R+ K   + +       EE+
Sbjct: 1373 HNERRRKRDLEEQGVTAADVEEA 1395