Pairwise Alignments

Query, 1412 a.a., DNA-directed RNA polymerase subunit beta' from Burkholderia phytofirmans PsJN

Subject, 1426 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Sphingomonas koreensis DSMZ 15582

 Score = 1623 bits (4202), Expect = 0.0
 Identities = 831/1381 (60%), Positives = 1053/1381 (76%), Gaps = 32/1381 (2%)

Query: 1    MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60
            M  L +    V +PE FD I+IG+ASPD+IRSWSFGE+KKPETINYRTFKPERDGLFCA+
Sbjct: 1    MNELTNFANPVAKPETFDQIQIGIASPDRIRSWSFGEIKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL 120
            IFGPIKDYECLCGKYKR+K++G++CEKCGVEVT++KVRRERMGHIELA+PVAHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL 120

Query: 121  PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYG-DEFRAE 179
            PSR+G++LDM L+ +ERVLYFE+Y+V +PG+TPL+  Q++TE++  +  +EYG D F A 
Sbjct: 121  PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG 180

Query: 180  MGAEGVRELLRAINIDEQVEMLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVL 239
            +GAE V+ +L  ++++ + + L  EL  T SE K KK  KRLKV+E+F  SG +P+WM+L
Sbjct: 181  IGAEAVKIMLMDLDLEGERKELLEELATTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL 240

Query: 240  EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML 299
            +V+PV+PPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL+AP+IIVRNEKRML
Sbjct: 241  DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML 300

Query: 300  QEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP 359
            QEAVD+L DNGRRG+ +TGANKRPLKSL+DM+KGK GRFRQNLLGKRVDYSGRSVIV GP
Sbjct: 301  QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP 360

Query: 360  TLKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREH 419
             LKLHQCGLPK MALELFKPFI+ +L+  G++ T+K AKK VE +   VWDIL+EVIREH
Sbjct: 361  ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH 420

Query: 420  PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME 479
            PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC+AFNADFDGDQMAVHVPLSLEAQ+E
Sbjct: 421  PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE 480

Query: 480  ARTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAVNAKGEGLTFTGVSEALRAYEN 539
            AR LM+++NN+L PANG P IVPSQD+VLGLYY + E  N  G+G+    ++E  +A   
Sbjct: 481  ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYISMEKENEPGQGMILGDMAEVHQALFA 540

Query: 540  KEVELASRVNVRITEMVHNEDKSEGAPAFVPKITLYPTTVGRAILSEILPPG--LPFSVL 597
              V L +++  R+ +        E    ++ +   + TT GR +L E LP    +PF V+
Sbjct: 541  GAVTLHTKITSRVPQ------TDEDGNTYMKR---FETTPGRMLLGECLPKSHKVPFDVV 591

Query: 598  NKPLKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKET 657
            N+ L KK++  +I+  +R  G +ETV+FAD +M  GFR A +AGIS   DDM++P  K+ 
Sbjct: 592  NRLLTKKDVGDVIDEVYRHTGQKETVLFADAIMALGFRHAFKAGISFGKDDMIIPDSKDA 651

Query: 658  IVGDAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTDRDGN 717
            +V +    VK+Y++QY  GL+T QE+YN V+D WS   + V  AMM+++         G 
Sbjct: 652  LVDETRALVKDYEQQYQDGLITQQEKYNKVIDAWSRCGDQVAAAMMDEIKAVKTDPETG- 710

Query: 718  ETRQESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 777
              R++  N+IYMMA SGARGSA QI+QLAGMRGLMAKP G IIETPI +NF+EGL VL+Y
Sbjct: 711  --REKPANAIYMMAHSGARGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEY 768

Query: 778  FISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVV 837
            F STHGARKGLADTALKTANSGYLTRRLVDV+QD VV+E+DCGT   + MKA+V+GG  +
Sbjct: 769  FNSTHGARKGLADTALKTANSGYLTRRLVDVSQDCVVMEEDCGTERALEMKAIVQGGSTI 828

Query: 838  EALRDRILGRVTVADVVNPESQETLYETGTLLDEDAVEEIERLGIDEVRVRTPLTCETRY 897
             +L +RILGR T  DVV+P++ E    TGTLLDE  + +IE LGI  +++R+PL CE + 
Sbjct: 829  ASLGERILGRTTAEDVVDPKTGEVAIATGTLLDEAMIAQIEALGIQGMKIRSPLVCEAKI 888

Query: 898  GLCAACYGRDLGRGSSVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEA 957
            G+CA CYGRDL RG+ VN+GEAVGVIAAQSIGEPGTQLTMRTFHIGGAA +    S++EA
Sbjct: 889  GVCAKCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAA-QLNEQSNLEA 947

Query: 958  KSNGTVRFTATMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQI 1017
              +G V F   +R + + +G ++V SRS E  I D  GRE   H++PYGA ++  DG  +
Sbjct: 948  PVDGKVEF-RDVRIIVDQRGRRVVTSRSAELAILDMDGRELAVHRIPYGAYVMFDDGHVV 1006

Query: 1018 KAGTQLATWDPMTRPIITEWGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQA 1077
              G ++A WDP T P+ITE GGTVK++++ +G T+ +Q+D+ TG++  VVI+   RG+ A
Sbjct: 1007 AKGDRMAEWDPFTMPVITETGGTVKYQDLIDGKTLTEQVDEATGIAQRVVIE--NRGAAA 1064

Query: 1078 SK-TVRPQVKLL-DANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPVES 1135
             K  +RP++ L  D+ GE         + +     GA+I+V+DG  VQ G+VLAR+  ES
Sbjct: 1065 KKEDLRPRLTLTGDSEGE---------AARYMLAPGAVISVEDGATVQGGDVLARVSRES 1115

Query: 1136 QKTRDITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLDGNQ-HEF 1194
             KTRDITGGLPRVAELFEAR PK+  I+A+V+G   FGKD K K+++ I   DG +  E+
Sbjct: 1116 AKTRDITGGLPRVAELFEARKPKENAIIAKVSGRVVFGKDYKAKRKIGIQPEDGGEVVEY 1175

Query: 1195 LIAKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKI 1254
            L+ K K + V +G  V +G+ ++ G  DPHDIL + GIE L+ Y+V E+Q+VYRLQGVKI
Sbjct: 1176 LVPKSKVIDVQEGDYVKRGDNLIGGSPDPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKI 1235

Query: 1255 NDKHIEVIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENVLLG 1314
            NDKHIEVIVRQML++V+ITD GDT  +PGEQV+R +M DE +  +   + PA  + +LLG
Sbjct: 1236 NDKHIEVIVRQMLQKVEITDAGDTTLLPGEQVDRDEM-DETNAKLEPGQAPAQGKPILLG 1294

Query: 1315 ITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKA 1374
            ITKASL T SFISAASFQETTRVLTEAA+ GK+D L GLKENVIVGRLIPAGTG   ++ 
Sbjct: 1295 ITKASLQTRSFISAASFQETTRVLTEAAVQGKQDTLIGLKENVIVGRLIPAGTGAGMNRM 1354

Query: 1375 R 1375
            R
Sbjct: 1355 R 1355