Pairwise Alignments

Query, 1412 a.a., DNA-directed RNA polymerase subunit beta' from Burkholderia phytofirmans PsJN

Subject, 1414 a.a., DNA-directed RNA polymerase subunit beta' from Cupriavidus basilensis FW507-4G11

 Score = 2400 bits (6221), Expect = 0.0
 Identities = 1221/1413 (86%), Positives = 1304/1413 (92%), Gaps = 2/1413 (0%)

Query: 1    MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60
            MKALLDLFKQVQQ E FDAIKIGLASP+KIRSWS+GEVKKPETINYRTFKPERDGLFCAK
Sbjct: 1    MKALLDLFKQVQQEEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL 120
            IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELA+P AHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELAAPTAHIWFLKSL 120

Query: 121  PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGD-EFRAE 179
            PSRLGMVLDMTLRDIERVLYFEA+VV++PGMTPLK  QIM+E+DY  K EEYG+ EF A 
Sbjct: 121  PSRLGMVLDMTLRDIERVLYFEAFVVLEPGMTPLKKSQIMSEDDYIAKCEEYGEGEFVAM 180

Query: 180  MGAEGVRELLRAINIDEQVEMLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVL 239
            MGAEG+RELLR I+I++Q+E +R EL+ TGSEAKIKK+AKRLKVLEAFQRSGIKP+WM+L
Sbjct: 181  MGAEGIRELLRGIDIEKQIETIRAELQTTGSEAKIKKFAKRLKVLEAFQRSGIKPEWMIL 240

Query: 240  EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML 299
            EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
Sbjct: 241  EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML 300

Query: 300  QEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP 359
            QEAVDSLLDNGRRGKAMTGANKRPLKSLA+MIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
Sbjct: 301  QEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP 360

Query: 360  TLKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREH 419
            TLKLHQCGLPKLMALELFKPFIF+KLE MG+ATTIKAAKKEVE+QT VVWDILEEVIREH
Sbjct: 361  TLKLHQCGLPKLMALELFKPFIFHKLETMGIATTIKAAKKEVESQTAVVWDILEEVIREH 420

Query: 420  PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME 479
            PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
Sbjct: 421  PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME 480

Query: 480  ARTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAVNAKGEGLTFTGVSEALRAYEN 539
            ARTLMLASNNVLFPANGDPSIVPSQD+VLGLYY TR+ +N KGEGLTF  +SE +RAYEN
Sbjct: 481  ARTLMLASNNVLFPANGDPSIVPSQDVVLGLYYTTRDKINGKGEGLTFADISEVIRAYEN 540

Query: 540  KEVELASRVNVRITEMVHNEDKSEGAPAFVPKITLYPTTVGRAILSEILPPGLPFSVLNK 599
            KEVELASRVNVRITE    +  + G   F PKITL  TTVGRAI+SEILP GLPFSVLNK
Sbjct: 541  KEVELASRVNVRITEYELVDKDAVGDARFAPKITLQATTVGRAIMSEILPKGLPFSVLNK 600

Query: 600  PLKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIV 659
            PLKKKEISRLINTAFRKCGLRETVIFAD+L+QSGFRLATRAGISI +DDMLVPPQKE I+
Sbjct: 601  PLKKKEISRLINTAFRKCGLRETVIFADKLLQSGFRLATRAGISIAIDDMLVPPQKEKII 660

Query: 660  GDAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTDRDGNET 719
             DAA KVKEYD+QYMSGLVT QERYNNVVDIW A  + VGKAMMEQL  E V DR GN  
Sbjct: 661  SDAAAKVKEYDKQYMSGLVTDQERYNNVVDIWGAAGDQVGKAMMEQLQHEDVVDRHGNTV 720

Query: 720  RQESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI 779
            +Q+SFNSIYMMADSGARGSA QIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI
Sbjct: 721  KQDSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI 780

Query: 780  STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEA 839
            STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGT+NGVAMKALVEGGEV+EA
Sbjct: 781  STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTTNGVAMKALVEGGEVIEA 840

Query: 840  LRDRILGRVTVADVVNPESQETLYETGTLLDEDAVEEIERLGIDEVRVRTPLTCETRYGL 899
            LRDRILGRVTV+DVVNPE+QET  E GTLLDED V+ I+ +G+DEV+VRTPL+C+TRYGL
Sbjct: 841  LRDRILGRVTVSDVVNPETQETAIEAGTLLDEDLVDMIDAIGVDEVKVRTPLSCDTRYGL 900

Query: 900  CAACYGRDLGRGSSVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKS 959
            C  CYGRDLGRG  VN GEAVGVIAAQSIGEPGTQLTMRTFHIGGAASR+AVASSVEAK+
Sbjct: 901  CGMCYGRDLGRGVLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAVASSVEAKA 960

Query: 960  NGTVRFTATMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQIKA 1019
             GTVRFTATMRYVTNAKGE IVISRSGEA+ITDDHGRERERHK+PYGATLL  DG  IKA
Sbjct: 961  TGTVRFTATMRYVTNAKGELIVISRSGEALITDDHGRERERHKIPYGATLLVQDGQAIKA 1020

Query: 1020 GTQLATWDPMTRPIITEWGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASK 1079
            GTQLATWD +TRPI++E+ GT KFENVEEGVTVAKQ+D+VTGLSTLVVID KRR + A+K
Sbjct: 1021 GTQLATWDALTRPIVSEYTGTTKFENVEEGVTVAKQMDEVTGLSTLVVIDAKRR-TAATK 1079

Query: 1080 TVRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPVESQKTR 1139
             +RPQVKLLDANG+EVKIP T+HSV IGFQVGALITVKDGQQV VGEVLARIP ESQKTR
Sbjct: 1080 GLRPQVKLLDANGQEVKIPGTDHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTR 1139

Query: 1140 DITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLDGNQHEFLIAKE 1199
            DITGGLPRVAELFEARSPKDA +LAEVTGTTSFGKDTKGKQRLVITDLDGN HEFLI KE
Sbjct: 1140 DITGGLPRVAELFEARSPKDAAVLAEVTGTTSFGKDTKGKQRLVITDLDGNAHEFLITKE 1199

Query: 1200 KQVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHI 1259
            KQVLVHDGQVVNKGEMIV+GPADPHDILRL+GIE L+ YIVDEVQDVYRLQGVKINDKHI
Sbjct: 1200 KQVLVHDGQVVNKGEMIVEGPADPHDILRLKGIEELAHYIVDEVQDVYRLQGVKINDKHI 1259

Query: 1260 EVIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENVLLGITKAS 1319
            EVIVRQMLRRVQI D GDT+FIPGEQVERS++LDENDR+IAE KRPATYEN+LLGITKAS
Sbjct: 1260 EVIVRQMLRRVQIADVGDTKFIPGEQVERSELLDENDRVIAEGKRPATYENLLLGITKAS 1319

Query: 1320 LSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKSKE 1379
            LSTDSFISAASFQETTRVLTEAAIMGK DDLRGLKENVIVGRLIPAGTGLA+H+ARK++E
Sbjct: 1320 LSTDSFISAASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGLAYHRARKARE 1379

Query: 1380 LSDRERFDQIAAEESFEFGTPETPAAEQQHSGE 1412
             ++RER   I+ EE   F  P    A  +  G+
Sbjct: 1380 AAERERAQAISDEEQSLFIEPPVVPATTEGEGD 1412