Pairwise Alignments

Query, 1412 a.a., DNA-directed RNA polymerase subunit beta' from Burkholderia phytofirmans PsJN

Subject, 1427 a.a., DNA-directed RNA polymerase beta' chain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 1314 bits (3401), Expect = 0.0
 Identities = 698/1444 (48%), Positives = 954/1444 (66%), Gaps = 106/1444 (7%)

Query: 17   FDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYK 76
            F  I IGLASP++I   S GEV KPETINYRT+KPERDGLFC +IFGPIKDYEC CGKYK
Sbjct: 13   FSKISIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGPIKDYECHCGKYK 72

Query: 77   RLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRDIE 136
            R++++G++C++CGVEVT  KVRRERMGHI+L  PVAHIW+ +SLP+++G +L +  + ++
Sbjct: 73   RIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFRSLPNKIGYLLGLPTKKLD 132

Query: 137  RVLYFEAYVVIDPGMTP---LKARQIMTEEDYYN------KVEEYGDE-----FRAEMGA 182
             ++Y+E YVVI PG+     +    +++EE+Y +      K  +Y ++     F A+MGA
Sbjct: 133  SIIYYERYVVIQPGVKAEDGIAEYDLLSEEEYLDILDTLPKDNQYLEDNDPNKFIAKMGA 192

Query: 183  EGVRELLRAINIDEQVEMLRTELKNTGSEAKIKKYAKRLKVLEAFQ--RSGIKPDWMVLE 240
            E + +LL  +++D     LR    N  S+ +  +  KRL+V+E+F+  R   KP+WM++ 
Sbjct: 193  EAIYDLLARLDLDALSYELRHRAGNDASQQRKNEALKRLQVVESFRASRGRNKPEWMIVR 252

Query: 241  VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ 300
            ++PV+PPELRPLVPLDGGRFATSDLNDLYRRVI RNNRLKRL+E+KAPE+I+RNEKRMLQ
Sbjct: 253  IVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPEVILRNEKRMLQ 312

Query: 301  EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT 360
            E+VDSL DN R+  A+     RPLKSL+D +KGK GRFRQNLLGKRVDYS RSVIVVGP 
Sbjct: 313  ESVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVDYSARSVIVVGPE 372

Query: 361  LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP 420
            LK+ +CG+PKLMA EL+KPFI  KL   G+  T+K+AKK V+ +  V+WDILE V++ HP
Sbjct: 373  LKMGECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEAVIWDILEHVMKGHP 432

Query: 421  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA 480
            V+LNRAPTLHRLGIQAF+P +IEGKAIQLHPL C AFNADFDGDQMAVH+PLS EA +EA
Sbjct: 433  VLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMAVHLPLSNEAILEA 492

Query: 481  RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAVNAKGEGLTFTGVSEALRAYENK 540
            + LML S+N+L PANG P  VP+QD+VLGLYY T+    AKGEGLTF G  EAL AY   
Sbjct: 493  QMLMLQSHNILNPANGAPITVPAQDMVLGLYYITKLRAGAKGEGLTFYGPEEALIAYNEG 552

Query: 541  EVELASRVNVRITEMVHNEDKSEGAPAFVPKITLYPTTVGRAILSEILPPGLPFSVLNKP 600
            +V++ + V V + ++  N +  +          +  T+VGR I++EI+PP   +  +N  
Sbjct: 553  KVDIHAPVKVIVKDVDENGNIVD---------VMRETSVGRVIVNEIVPPEAGY--INTI 601

Query: 601  LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG 660
            + KK +  +I+   + CG+ +   F D +   G+++A + G+S  + D+++P +KET+V 
Sbjct: 602  ISKKSLRDIISDVIKVCGVAKAADFLDGIKNLGYQMAFKGGLSFNLGDIIIPKEKETLVQ 661

Query: 661  DAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTDRDGNETR 720
                +V++    Y  G +T+ ERYN V+DIW+  +  +   +M+ +S++           
Sbjct: 662  KGYDEVEQVVNNYNMGFITNNERYNQVIDIWTHVNSELSNILMKTISSD----------- 710

Query: 721  QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAK------PDGSIIETPITANFREGLNV 774
             + FNS+YMM DSGARGS  QIRQL+GMRGLMAK        G IIE PI +NF+EGL+V
Sbjct: 711  DQGFNSVYMMLDSGARGSKEQIRQLSGMRGLMAKLQKAGAEGGQIIENPILSNFKEGLSV 770

Query: 775  LQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGG 834
            L+YFISTHGARKGLADTALKTA++GYLTRRLVDV+ D+++ E+DCGT  G+    L    
Sbjct: 771  LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSHDVIITEEDCGTLRGLVCTDLKNND 830

Query: 835  EVVEALRDRILGRVTVADVVNPESQETLYETGTLLDEDAVEEIERLGIDEVRVRTPLTCE 894
            EV+  L +RILGRV+V D+++P + E L   G  + E+  ++I+   I+ V +R+ LTCE
Sbjct: 831  EVIATLYERILGRVSVHDIIHPTTGELLVAGGEEITEEVAKKIQDSPIESVEIRSVLTCE 890

Query: 895  TRYGLCAACYGRDLGRGSSVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASS 954
             + G+CA CYGR+L     V  GEAVGVIAAQSIGEPGTQLT+RTFH GG A+  A  +S
Sbjct: 891  AKKGVCAKCYGRNLATSRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHAGGTAANIAANAS 950

Query: 955  VEAKSNGTVRFTATMRY-VTNAKGE--QIVISRSGEAMITD-DHGRERERHKVPYGATLL 1010
            + AK++  + F       + +  GE  ++V+ R  E    D + G     H VPYG+TL 
Sbjct: 951  IVAKNSARLEFEELRTVDIVDEMGEAAKVVVGRLAEVRFVDVNTGIVLSTHNVPYGSTLY 1010

Query: 1011 QLDGAQIKAGTQLATWDPMTRPIITEWGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDV 1070
              DG  ++ G  +A WDP    IITE  G ++FE V E VT   + D+ TGL  +++I+ 
Sbjct: 1011 VSDGDLVEKGKLIAKWDPFNAVIITEATGKIEFEGVIENVTYKVESDEATGLREIIIIES 1070

Query: 1071 KRRGSQASKTVRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLAR 1130
            K       KT  P   +L  +G+ ++  N          VG  + +++GQ+V+ GEV+ +
Sbjct: 1071 K------DKTKVPSAHILTEDGDLIRTYN--------LPVGGHVIIENGQKVKAGEVIVK 1116

Query: 1131 IPVESQKTRDITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLDGN 1190
            IP    K  DITGGLPRV ELFEAR+P +  +++E+ G  + GK  +G + +++T   G 
Sbjct: 1117 IPRAVGKAGDITGGLPRVTELFEARNPSNPAVVSEIDGEVTMGKIKRGNREIIVTSKTGE 1176

Query: 1191 QHEFLIAKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQ 1250
              ++L+A  KQ+LV +   V  G  + DG   P DIL ++G  A+  YIV+EVQDVYRLQ
Sbjct: 1177 VKKYLVALSKQILVQENDYVRAGTPLSDGATTPADILAIKGPTAVQEYIVNEVQDVYRLQ 1236

Query: 1251 GVKINDKHIEVIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAE--------- 1301
            GVKINDKH E+IVRQM+R+VQI + GDTRF+  + V++ + ++ENDR+  +         
Sbjct: 1237 GVKINDKHFEIIVRQMMRKVQIDEPGDTRFLEQQVVDKLEFMEENDRIWGKKVVVDAGDS 1296

Query: 1302 ------------------------DKRP--------ATYENVLLGITKASLSTDSFISAA 1329
                                    D +P        AT   +L GIT+A+L T SF+SAA
Sbjct: 1297 QNMQPGQIVTARKLRDENSMLKRRDLKPVEVRDAVAATSTQILQGITRAALQTSSFMSAA 1356

Query: 1330 SFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKSKELSDRERFDQI 1389
            SFQETT+VL EAAI GK D L G+KENVI G LIPAGTG    +  +   +  +E +D+I
Sbjct: 1357 SFQETTKVLNEAAINGKTDKLEGMKENVICGHLIPAGTG---QREFEKIIVGSKEEYDRI 1413

Query: 1390 AAEE 1393
             A +
Sbjct: 1414 LANK 1417