Pairwise Alignments

Query, 246 a.a., 16S rRNA methyltransferase from Burkholderia phytofirmans PsJN

Subject, 239 a.a., Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) from Pseudomonas fluorescens FW300-N1B4

 Score =  165 bits (417), Expect = 9e-46
 Identities = 94/245 (38%), Positives = 137/245 (55%), Gaps = 11/245 (4%)

Query: 1   MPRFFVGTPLQPEDVLPLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 59
           + RFF+  PL   +   LP+    ++  VLR+  GD++ LF+G G E+   L EV ++  
Sbjct: 3   LSRFFIDAPLSTGEH-ELPEAQAHYISRVLRMAEGDAVQLFDGSGHEFRGTLAEVGKKRV 61

Query: 60  MVKIREFRDIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASSFVPLTTTRSVVRLSGD 119
           +V+I E    +VE+   + L QG++ G++MDW I+KA ELG S   P+ T R  VRL  +
Sbjct: 62  VVQIDESFAGQVESSLAVHLGQGLSRGERMDWAIQKATELGVSEITPIFTDRCEVRLKDE 121

Query: 120 RAQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGSMPRTPEEGDLRILLSPRASI 179
           RA +R  HW+ +  ++CEQCGR+ +P + P   +A WL        E +L+++L P A  
Sbjct: 122 RADKRLMHWRQVAISACEQCGRSSVPVIHPPLLLADWL-----KQTEAELKLVLHPVA-- 174

Query: 180 SFSALPSEPPKGRVTVLVGPEGGFSATEEAAAAAHGFTAVGLGPRVMRTETAGIAVLSAL 239
               L S      +  L+GPEGG S  E   A A GF A  LGPRV+RTETA +  L+  
Sbjct: 175 --EPLVSHAKPATLAFLIGPEGGLSDAEVEQAKAGGFHAARLGPRVLRTETAPVVALAVA 232

Query: 240 AAGWG 244
              WG
Sbjct: 233 QQLWG 237