Pairwise Alignments
Query, 894 a.a., excinuclease ABC subunit A from Burkholderia phytofirmans PsJN
Subject, 973 a.a., excinuclease ABC subunit A from Sinorhizobium meliloti 1021
Score = 493 bits (1269), Expect = e-143
Identities = 300/805 (37%), Positives = 427/805 (53%), Gaps = 91/805 (11%)
Query: 101 AVALQQQRGTPSARSSVGSVTTLS---SLVRMLYSRTGDYPPKQ---PMLFAEDFSPNTV 154
A+A R P +S G S + R+L+S P P + FS N
Sbjct: 235 AIAEFADRPLPPEETSAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNP 294
Query: 155 QGACPTCHGLGRVYEVTEKSMVPDDSLTIRERAIAAWPPA---WHGQNLRDILVTLGYDV 211
GAC TC GLG ++ E +VP+ + T+R+ AIA W + ++ Q L + G+ +
Sbjct: 295 FGACTTCDGLGSQQKIDEALIVPEPNRTLRDGAIAPWAKSTSPYYNQTLEALGTVFGFKL 354
Query: 212 DKPWRDLPKKDRDWILF-TDEQPTVPVYAGLTPKETRAALRRKDEPSYQGTFTGARRYVL 270
W +L ++ ++ IL T ++ T G T TF G +
Sbjct: 355 GSRWSELSEEAQEAILHGTKDKITFHYQDGARSYNTTK------------TFEGIVPNLE 402
Query: 271 HTFANTQSALMKKRVSRFMIGSVCPTCHGKRLKKEALSVKFAGLDIGEFAQLPLARLAEM 330
+ T SA ++ + R+M + CP C G RLK EAL+VK L IGE +++ +
Sbjct: 403 RRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKIHALHIGEVSEMSIR----- 457
Query: 331 LAPIARGEWPEPDVGHSGKDPGKGSVLSKNAMRDAVDKRVAAGGSAHKAAPDVRRTPNLS 390
A +W E H LS
Sbjct: 458 ----AARDWFEVLPEH------------------------------------------LS 471
Query: 391 EEKRVAAQRIAAELLERLTTLVDLGLGYLALERSTPTLSSGELQRLRLATQLSSQLFGVV 450
++ A RI E+ ERL L D+GL YL+L R++ TLS GE QR+RLA+Q+ S L GV+
Sbjct: 472 TKQNEIAVRILKEIRERLRFLNDVGLEYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVL 531
Query: 451 YVLDEPSAGLHPADGEALFSALQSLKAAGNSLFVVEHDLQMMRRADWLVDVGPAAGEAGG 510
YVLDEPS GLH D L L+ L+ GN++ VVEHD + AD++VD+GPAAG GG
Sbjct: 532 YVLDEPSIGLHQRDNARLLDTLRHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGG 591
Query: 511 HVVYSGPPAGLAKVEASHTRRHL---FAPPAPVARATREPAGWLRLAGITRNNLHGLDAA 567
V+ G P+ + S T ++L + P R + + + G NNL + A+
Sbjct: 592 EVIAEGTPSDIMSNPKSLTGKYLSGELSVAVPGERRKPKKKKEVTVVGARANNLKNVTAS 651
Query: 568 FPLGCLTAVTGVSGSGKSSLVSQALPELVASHLGRVFENPDDDEQDPLLATASAPTSGRI 627
PLG TAVTGVSG GKS+ + + L + A + ENP + ++
Sbjct: 652 IPLGVFTAVTGVSGGGKSTFLIETLYKAAARRVMGARENPAEHDR--------------- 696
Query: 628 AEGMDALRRLVRVDQKPIGRTPRSNLATYTGLFDHVRKLFADTPLARKRRYGAGRFSFNV 687
+G + + +++ +DQ PIGRTPRSN ATYTG F +R FA P A+ R Y GRFSFNV
Sbjct: 697 IDGFEHIDKVIDIDQSPIGRTPRSNPATYTGAFTPIRDWFAGLPEAKARGYQPGRFSFNV 756
Query: 688 AQGRCPTCEGEGFVSVELLFLPSVYAPCSTCHGTRYNTQTLEVTWRDKNIAEVLGLTVDA 747
GRC C+G+G + +E+ FLP VY C CHG RYN +TL+V ++ K+IA+VL +TV+
Sbjct: 757 KGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVHFKGKSIADVLDMTVEE 816
Query: 748 ACDFFADEASVMRALKVLRDIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGDTLYI 807
+FFA +V L L +GLGY+++GQ A LSGGEAQR+KLA EL + G TLYI
Sbjct: 817 GVEFFAAVPAVRDKLVTLNQVGLGYIKIGQQANTLSGGEAQRVKLAKELSKRSTGRTLYI 876
Query: 808 LDEPTTGLHPADVDRLMVQLQGLVDAGNTVVVVEHDMRVASQSDWVVDVGPGAGDAGGKI 867
LDEPTTGLH DV +L+ L LV+ GN+VVV+EH++ V +DW++D GP GD GG++
Sbjct: 877 LDEPTTGLHFHDVAKLLEVLHELVNQGNSVVVIEHNLEVIKTADWIIDFGPEGGDGGGEV 936
Query: 868 VASGTPAEILRVKESRTAEYLRQHL 892
+A GTP E+++ S T ++L++ L
Sbjct: 937 IAQGTPEEVVKEPRSYTGQFLKELL 961
Score = 134 bits (338), Expect = 2e-35
Identities = 80/197 (40%), Positives = 114/197 (57%), Gaps = 17/197 (8%)
Query: 713 APCSTCHGTRYNTQTLEVTWRDKNIAEVLGLTVDAACDFFA----------DEASVM--- 759
APC C G R + L V +I EV +++ AA D+F +E +V
Sbjct: 424 APCPACAGYRLKPEALAVKIHALHIGEVSEMSIRAARDWFEVLPEHLSTKQNEIAVRILK 483
Query: 760 ---RALKVLRDIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGDTLYILDEPTTGLH 816
L+ L D+GL YL L + + LSGGE+QRI+LA+++ G LY+LDEP+ GLH
Sbjct: 484 EIRERLRFLNDVGLEYLSLSRNSGTLSGGESQRIRLASQIGSGLTG-VLYVLDEPSIGLH 542
Query: 817 PADVDRLMVQLQGLVDAGNTVVVVEHDMRVASQSDWVVDVGPGAGDAGGKIVASGTPAEI 876
D RL+ L+ L D GNTV+VVEHD +D+VVD+GP AG GG+++A GTP++I
Sbjct: 543 QRDNARLLDTLRHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGGEVIAEGTPSDI 602
Query: 877 LRVKESRTAEYLRQHLA 893
+ +S T +YL L+
Sbjct: 603 MSNPKSLTGKYLSGELS 619
Score = 132 bits (331), Expect = 1e-34
Identities = 60/113 (53%), Positives = 89/113 (78%)
Query: 23 VRVRGAREHNLKNIDVQIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYFESVAPYARR 82
+ +RGAREHNLK ID+ +PR+ L+V TG+SGSGKSSLAF T+YAE QRRY ES++ YAR+
Sbjct: 7 ISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66
Query: 83 LIEQVGVPEVDAIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLVRMLYSRTG 135
+E + P+VD I+GL PA++++Q+ + + RS+VG+VT + +R+L++R G
Sbjct: 67 FLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYLRLLFARVG 119
Score = 55.5 bits (132), Expect = 2e-11
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 551 LRLAGITRNNLHGLDAAFPLGCLTAVTGVSGSGKSSLVSQALPELVASHLGRVFENPDDD 610
+ + G +NL G+D P L +TG+SGSGKSSL A + A R E+
Sbjct: 7 ISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSL---AFDTIYAEGQRRYVESLSAY 63
Query: 611 EQDPLLATASAPTSGRIAEGMDALRRLVRVDQKPIGRTPRSNLATYTGLFDHVRKLFA 668
+ L P +I D L + ++QK R PRS + T T ++D++R LFA
Sbjct: 64 ARQ-FLEMMQKPDVDQI----DGLSPAISIEQKTTSRNPRSTVGTVTEIYDYLRLLFA 116
Score = 54.7 bits (130), Expect = 3e-11
Identities = 49/168 (29%), Positives = 70/168 (41%), Gaps = 27/168 (16%)
Query: 23 VRVRGAREHNLKNIDVQIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYF---ESVAPY 79
V V GAR +NLKN+ IP TGVSG GKS+ TLY A RR E+ A +
Sbjct: 635 VTVVGARANNLKNVTASIPLGVFTAVTGVSGGGKSTFLIETLYKAAARRVMGARENPAEH 694
Query: 80 ARRLIEQVGVPEVDAIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLVRMLY-----SRT 134
R +D E + + + Q + RS+ + T + +R + ++
Sbjct: 695 DR----------IDGFEHIDKVIDIDQSPIGRTPRSNPATYTGAFTPIRDWFAGLPEAKA 744
Query: 135 GDYPPKQPMLFAEDFSPNTVQGACPTCHGLGRVYEVTEKSMVPDDSLT 182
Y P + FS N G C C G G + E +PD +T
Sbjct: 745 RGYQPGR-------FSFNVKGGRCEACQGDGVI--KIEMHFLPDVYVT 783