Pairwise Alignments
Query, 894 a.a., excinuclease ABC subunit A from Burkholderia phytofirmans PsJN
Subject, 953 a.a., excinuclease ABC, A subunit (RefSeq) from Dinoroseobacter shibae DFL-12
Score = 488 bits (1256), Expect = e-142
Identities = 292/750 (38%), Positives = 402/750 (53%), Gaps = 81/750 (10%)
Query: 149 FSPNTVQGACPTCHGLGRVYEVTEKSMVPDDSLTIRERAIAAWPPA---WHGQNLRDILV 205
FS N GACP C GLG E+ +VPD +LT+ A+A W + Q + I
Sbjct: 272 FSFNAPFGACPACDGLGVELFFDERLVVPDATLTLANGALAPWRKGKSPYFLQTINAIAK 331
Query: 206 TLGYDVDKPWRDLPKKDRDWILFTDEQPTVPVYAGLTPKETRAALRRKDEPSYQGTFTGA 265
+D PW+ LP+K ++ L + + T + + +++G
Sbjct: 332 HYEFDPKTPWKALPEKVQEVFLRGSGEEEI------TFRYDEGGRVYQVSRAFEGVIPNM 385
Query: 266 RRYVLHTFANTQSALMKKRVSRFMIGSVCPTCHGKRLKKEALSVKFAGLDIGEFAQLPLA 325
R + T S+ +++ R+ C TC G RL+ EAL+VK AGL +GE Q+ +
Sbjct: 386 ER----RYRETDSSWIREEFERYQNNRSCGTCGGYRLRPEALAVKIAGLHVGEVVQMSIR 441
Query: 326 RLAEMLAPIARGEWPEPDVGHSGKDPGKGSVLSKNAMRDAVDKRVAAGGSAHKAAPDVRR 385
+ + PE
Sbjct: 442 EAHDWCRTV-----PE-------------------------------------------- 452
Query: 386 TPNLSEEKRVAAQRIAAELLERLTTLVDLGLGYLALERSTPTLSSGELQRLRLATQLSSQ 445
+LS +K A+ I E+ ERL L ++GL YL L R+ TLS GE QR+RLA+Q+ S
Sbjct: 453 --HLSVQKNEIARAILKEIRERLGFLNNVGLEYLTLSRNAGTLSGGESQRIRLASQIGSG 510
Query: 446 LFGVVYVLDEPSAGLHPADGEALFSALQSLKAAGNSLFVVEHDLQMMRRADWLVDVGPAA 505
L GV+YVLDEPS GLH D + L + L++L+ GN++ VVEHD + +R AD++ D+GP A
Sbjct: 511 LTGVLYVLDEPSIGLHQRDNDRLLTTLKNLRDQGNTVIVVEHDEEAVREADYVFDIGPGA 570
Query: 506 GEAGGHVVYSGPPAGLAKVEASHTRRHLFAPPAPVARATREPAGWLRLA--GITRNNLHG 563
G GG VV G PA + AS T +L ATR ++ T NNL
Sbjct: 571 GVHGGQVVAHGTPAQIMANPASITGDYLAGRREIPVPATRRKGNKKKVTVRKATGNNLQD 630
Query: 564 LDAAFPLGCLTAVTGVSGSGKSSLVSQALPELVASHLGRVFENPDDDEQDPLLATASAPT 623
L FPLG VTGVSG GKS+L + L + + L + P E
Sbjct: 631 LTVDFPLGKFVCVTGVSGGGKSTLTIETLFKTASMRLNGARQTPAPCET----------- 679
Query: 624 SGRIAEGMDALRRLVRVDQKPIGRTPRSNLATYTGLFDHVRKLFADTPLARKRRYGAGRF 683
+G++ L +++ +DQ+PIGRTPRSN ATYTG F +R FA P AR R Y GRF
Sbjct: 680 ----IKGLEHLDKVIDIDQRPIGRTPRSNPATYTGAFTPIRDWFAGLPEARTRGYKPGRF 735
Query: 684 SFNVAQGRCPTCEGEGFVSVELLFLPSVYAPCSTCHGTRYNTQTLEVTWRDKNIAEVLGL 743
SFNV GRC C+G+G + +E+ FLP VY C TC G RYN +TLEVT++ K+IA+VL +
Sbjct: 736 SFNVKGGRCEACQGDGVIKIEMHFLPDVYVECETCKGKRYNRETLEVTFKGKSIADVLDM 795
Query: 744 TVDAACDFFADEASVMRALKVLRDIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGD 803
TV+ A +FF S+ + L +GLGY+++GQ AT LSGGEAQR+KL+ EL + G
Sbjct: 796 TVEDAQEFFKAVPSIREKMDALMRVGLGYIKVGQQATTLSGGEAQRVKLSKELAKRSTGR 855
Query: 804 TLYILDEPTTGLHPADVDRLMVQLQGLVDAGNTVVVVEHDMRVASQSDWVVDVGPGAGDA 863
TLYILDEPTTGLH DV +L+ L LV+ GNTVVV+EH++ V +DW++D+GP GD
Sbjct: 856 TLYILDEPTTGLHFEDVRKLLEVLHELVEQGNTVVVIEHNLDVIKTADWLIDIGPEGGDG 915
Query: 864 GGKIVASGTPAEILRVKESRTAEYLRQHLA 893
GG +VA+GTP ++ V ES T YL+ LA
Sbjct: 916 GGTLVATGTPEQVAEVAESHTGRYLKPMLA 945
Score = 135 bits (340), Expect = 1e-35
Identities = 64/113 (56%), Positives = 89/113 (78%)
Query: 23 VRVRGAREHNLKNIDVQIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYFESVAPYARR 82
+ VRGAREHNLK+IDV IPRD LVV TG+SGSGKSSLAF T+YAE QRRY ES++ YAR+
Sbjct: 7 IEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66
Query: 83 LIEQVGVPEVDAIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLVRMLYSRTG 135
++ + P+VD I GL PA++++Q+ + + RS+VG+VT + +R+L++R G
Sbjct: 67 FLDMMQKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVG 119
Score = 116 bits (291), Expect = 6e-30
Identities = 76/254 (29%), Positives = 110/254 (43%), Gaps = 68/254 (26%)
Query: 294 CPTCHGKRLKKEALSVKFAGLDIGEFAQLPLARLAEMLAPIARGEWPEPDVGHSGKDPGK 353
C TC GKR +E L V F G I
Sbjct: 767 CETCKGKRYNRETLEVTFKGKSIA------------------------------------ 790
Query: 354 GSVLSKNAMRDAVDKRVAAGGSAHKAAPDVRRTPNLSEEKRVAAQRIAAELLERLTTLVD 413
D +D V KA P +R E++ L+
Sbjct: 791 ----------DVLDMTVEDAQEFFKAVPSIR---------------------EKMDALMR 819
Query: 414 LGLGYLALERSTPTLSSGELQRLRLATQLSSQLFG-VVYVLDEPSAGLHPADGEALFSAL 472
+GLGY+ + + TLS GE QR++L+ +L+ + G +Y+LDEP+ GLH D L L
Sbjct: 820 VGLGYIKVGQQATTLSGGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVL 879
Query: 473 QSLKAAGNSLFVVEHDLQMMRRADWLVDVGPAAGEAGGHVVYSGPPAGLAKVEASHTRRH 532
L GN++ V+EH+L +++ ADWL+D+GP G+ GG +V +G P +A+V SHT R+
Sbjct: 880 HELVEQGNTVVVIEHNLDVIKTADWLIDIGPEGGDGGGTLVATGTPEQVAEVAESHTGRY 939
Query: 533 LFAPPAPVARATRE 546
L A R E
Sbjct: 940 LKPMLAGAKRVAAE 953
Score = 50.4 bits (119), Expect = 5e-10
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 551 LRLAGITRNNLHGLDAAFPLGCLTAVTGVSGSGKSSLVSQALPELVASHLGRVFENPDDD 610
+ + G +NL +D P L +TG+SGSGKSSL A + A R E+
Sbjct: 7 IEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSL---AFDTIYAEGQRRYVESLSAY 63
Query: 611 EQDPLLATASAPTSGRIAEGMDALRRLVRVDQKPIGRTPRSNLATYTGLFDHVRKLFA 668
+ L P I+ L + ++QK + PRS + T T ++D++R LFA
Sbjct: 64 ARQ-FLDMMQKPDVDHIS----GLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFA 116
Score = 47.4 bits (111), Expect = 4e-09
Identities = 46/163 (28%), Positives = 68/163 (41%), Gaps = 25/163 (15%)
Query: 23 VRVRGAREHNLKNIDVQIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYFESVAPYARR 82
V VR A +NL+++ V P V TGVSG GKS+L TL+ A R +
Sbjct: 618 VTVRKATGNNLQDLTVDFPLGKFVCVTGVSGGGKSTLTIETLFKTASMRLNGA------- 670
Query: 83 LIEQVGVP--EVDAIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLVRMLY-----SRTG 135
Q P + +E L + + Q+ + RS+ + T + +R + +RT
Sbjct: 671 --RQTPAPCETIKGLEHLDKVIDIDQRPIGRTPRSNPATYTGAFTPIRDWFAGLPEARTR 728
Query: 136 DYPPKQPMLFAEDFSPNTVQGACPTCHGLGRVYEVTEKSMVPD 178
Y P + FS N G C C G G + E +PD
Sbjct: 729 GYKPGR-------FSFNVKGGRCEACQGDGVI--KIEMHFLPD 762