Pairwise Alignments

Query, 615 a.a., tetratricopeptide repeat protein from Burkholderia phytofirmans PsJN

Subject, 923 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score =  201 bits (511), Expect = 1e-55
 Identities = 143/440 (32%), Positives = 203/440 (46%), Gaps = 24/440 (5%)

Query: 185 GRAEEAIPCFQTALAAEPRFVAAHFNLANTFDATGRHAEAVASFKAALALQPNLPPAIFG 244
           G  E AI      L   P + AA       +    +    +   + A+AL P  P     
Sbjct: 21  GEFEAAIAQLDRLLGDVPDWAAALGLQGLCYYCCDQKETGITLLRRAIALDPTDPTHFNN 80

Query: 245 MGNALAALGRHAEALPYLERAVGLDPQFALAWLSLGTAHQALGAHGPAVRALDQALRLRP 304
           +GN L   G   EAL  L +A+ +DP    A  +     Q LG    A++   Q L   P
Sbjct: 81  LGNLLQRQGHLTEALERLTQALAIDPTHVAARFNRAITLQKLGDPATALQDYQQLLEADP 140

Query: 305 DLASAHMNRALAWLAQRDFARGLPEYEWRLQTMAQ-PVIQT---LPRWHGEPIAERTLLV 360
           D      N A A LA  D+  GLP YE R Q +   P I+    LPRW G+ + ++TLLV
Sbjct: 141 DNPEIRYNSAHAALAIGDWDFGLPAYEARCQQLQHFPEIEASLKLPRWQGQDLDQQTLLV 200

Query: 361 HAEQGFGDTLQFVRFVPLVAQR--AARVVLEVQPQLLPLLAPAAQAWRVTLIAQGAPRPA 418
             EQGFGD L   R++PL+ QR   AR+V +  P L+ L    A   R+ ++A+GA  P 
Sbjct: 201 WGEQGFGDRLMGARWIPLLRQRYPQARIVWQTSPSLVRLFQTLADD-RLMVLAEGAELPV 259

Query: 419 ADLHCPLLSLPLALGTTFDTIPQRTPYLSVPAAYGRKWRGSLGGQAKRKIGIAWS-GR-- 475
            D   PLLSL L   +  + +P   PY              L    + ++G+ WS GR  
Sbjct: 260 CDWQVPLLSLMLIFQSDRNRLPWHGPYFFPHKG------DFLPASDRPRLGLVWSAGRNP 313

Query: 476 IQQNE---TRSMQLAALDPLFALEGIDWIVLQPELSAEERMALDTHPRAASIHRFDKRIG 532
            Q  E    +S  LA L  + ++ G D + LQ + + ++   L        +      IG
Sbjct: 314 AQSAEFAANKSCPLALLWSVLSVSGWDVVSLQVDEARQDLQTLSD-----PLLDLGSEIG 368

Query: 533 DFADTAAIIERLDAVVSIDTSIAHVAGALRKPLWLMLPFAADWRWFAGETGSPWYPGATL 592
           DF DT   +  LD ++++DT+IAH+ G +  P W++LP   DWRW      +PWYP   L
Sbjct: 369 DFQDTVDRLAHLDLLITVDTAIAHLGGMIGLPTWVLLPAVPDWRWELSGATTPWYPSLRL 428

Query: 593 VRQPQPGAWGDVVEAVANAL 612
            RQP PG W   +  +  AL
Sbjct: 429 FRQPSPGDWSGAIAELQTAL 448



 Score =  147 bits (371), Expect = 2e-39
 Identities = 122/432 (28%), Positives = 184/432 (42%), Gaps = 24/432 (5%)

Query: 197 ALAAEPRFVAAHFNLANTFDATGRHAEAVASFKAALALQPNLPPAIFGMGNALAALGRHA 256
           A+A  P   + H  L  +    G +A A  +   A  L P          +      +  
Sbjct: 492 AVAIAPEEPSFHRALGRSLKQQGDYAGAAQALAIACELAPTQAEFWHERSSLEYYDNQLT 551

Query: 257 EALPYLERAVGLDPQFALAWLSLGTAHQALGAHGPAVRALDQALRLRPDLASAHMNRALA 316
            AL  L +A+ L    A   +S G  H  LG    +    D A  + P+      NR   
Sbjct: 552 AALNSLNQAIALQGATADHLISRGVLHYRLGQFPESCADYDAAAAIAPESPLLRCNRGFL 611

Query: 317 WLAQRDFARGLPEYEWRLQTMAQ----PVIQTLPRWHGEPIAERTLLVHAEQGFGDTLQF 372
            L   ++ +G P+ E R    +        Q  P W GEP+ ++TLL+  EQG GD L F
Sbjct: 612 QLHWGNWLQGWPDLEVRFDFQSDLDPFQYRQLAPAWQGEPLGQQTLLIWGEQGLGDHLLF 671

Query: 373 VRFVP-LVAQRAARVVLEVQPQLLPLLAPAAQAWRVTLIAQGAPRPAADLHCPLLSLPLA 431
            R++P L  Q     ++ V   LL  L       R+ +     P PA D    L+SLP  
Sbjct: 672 CRWLPELRLQHPQAQLIFVTDPLLERLMQQLADDRLQICCLDEPVPACDRQVALMSLPAI 731

Query: 432 LGTTFDTIPQRTPYLSVPAAYGRKWRGSLGGQAKRKIGIAW-SGRIQQNET------RSM 484
             TT  T+P R        AY +     L      ++G  W SG+    ET      +S 
Sbjct: 732 AQTTPATVPWR-------GAYFQSSMPPLRCAETLQVGFVWASGKRSSPETARLYREKSC 784

Query: 485 QLAALDP-LFALEGIDWIVLQPELS-AEERMALDTHPRAASIHRFDKRIGDFADTAAIIE 542
            L  L P L A+  +D+   Q     AE +  L+   R   +    +++ DF DTA  + 
Sbjct: 785 PLNELLPALLAVPAVDYYSFQVGADVAELQPWLEQSDRLFDL---SEQLQDFQDTADWLA 841

Query: 543 RLDAVVSIDTSIAHVAGALRKPLWLMLPFAADWRWFAGETGSPWYPGATLVRQPQPGAWG 602
            +D ++S+DT++A++AG +  P+W +LP  A+WRW      +PWYP   L RQ Q G W 
Sbjct: 842 EMDVLISVDTAVANLAGMMALPVWTLLPEPANWRWGLTGHTTPWYPSMRLYRQTQRGNWS 901

Query: 603 DVVEAVANALRK 614
             +  +   L++
Sbjct: 902 GAIAQIQQDLQQ 913



 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 41/147 (27%), Positives = 64/147 (43%)

Query: 5   FDRAFAAHRDGRLDDAERGYRATLDGNPAHVDALHLLGVLRHQQGQHAEAAELVRRAVNL 64
           + +A AA++ G  + A       L   P    AL L G+  +   Q      L+RRA+ L
Sbjct: 11  YQQAIAAYQAGEFEAAIAQLDRLLGDVPDWAAALGLQGLCYYCCDQKETGITLLRRAIAL 70

Query: 65  RPEDAALQLNLGNALKALGQIDDAIEQFRNALTLAPSFPMAHYNLGNAYAAAGRHEDAAD 124
            P D     NLGN L+  G + +A+E+   AL + P+   A +N        G    A  
Sbjct: 71  DPTDPTHFNNLGNLLQRQGHLTEALERLTQALAIDPTHVAARFNRAITLQKLGDPATALQ 130

Query: 125 AFEKSLRLQPDDASSHNNFGNALHALG 151
            +++ L   PD+     N  +A  A+G
Sbjct: 131 DYQQLLEADPDNPEIRYNSAHAALAIG 157



 Score = 32.7 bits (73), Expect = 7e-05
 Identities = 26/112 (23%), Positives = 48/112 (42%)

Query: 57  LVRRAVNLRPEDAALQLNLGNALKALGQIDDAIEQFRNALTLAPSFPMAHYNLGNAYAAA 116
           L+R+AV + PE+ +    LG +LK  G    A +    A  LAP+     +   +     
Sbjct: 488 LIRQAVAIAPEEPSFHRALGRSLKQQGDYAGAAQALAIACELAPTQAEFWHERSSLEYYD 547

Query: 117 GRHEDAADAFEKSLRLQPDDASSHNNFGNALHALGRHTEAIAAFRRTIELRP 168
            +   A ++  +++ LQ   A    + G   + LG+  E+ A +     + P
Sbjct: 548 NQLTAALNSLNQAIALQGATADHLISRGVLHYRLGQFPESCADYDAAAAIAP 599



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 20/91 (21%), Positives = 36/91 (39%)

Query: 13  RDGRLDDAERGYRATLDGNPAHVDALHLLGVLRHQQGQHAEAAELVRRAVNLRPEDAALQ 72
           R G L +A       L  +P HV A     +   + G  A A +  ++ +   P++  ++
Sbjct: 87  RQGHLTEALERLTQALAIDPTHVAARFNRAITLQKLGDPATALQDYQQLLEADPDNPEIR 146

Query: 73  LNLGNALKALGQIDDAIEQFRNALTLAPSFP 103
            N  +A  A+G  D  +  +         FP
Sbjct: 147 YNSAHAALAIGDWDFGLPAYEARCQQLQHFP 177



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 2/111 (1%)

Query: 2   QPVFDRAF--AAHRDGRLDDAERGYRATLDGNPAHVDALHLLGVLRHQQGQHAEAAELVR 59
           +P F RA   +  + G    A +      +  P   +  H    L +   Q   A   + 
Sbjct: 499 EPSFHRALGRSLKQQGDYAGAAQALAIACELAPTQAEFWHERSSLEYYDNQLTAALNSLN 558

Query: 60  RAVNLRPEDAALQLNLGNALKALGQIDDAIEQFRNALTLAPSFPMAHYNLG 110
           +A+ L+   A   ++ G     LGQ  ++   +  A  +AP  P+   N G
Sbjct: 559 QAIALQGATADHLISRGVLHYRLGQFPESCADYDAAAAIAPESPLLRCNRG 609