Pairwise Alignments

Query, 615 a.a., tetratricopeptide repeat protein from Burkholderia phytofirmans PsJN

Subject, 570 a.a., hypothetical protein from Herbaspirillum seropedicae SmR1

 Score =  269 bits (687), Expect = 3e-76
 Identities = 187/527 (35%), Positives = 260/527 (49%), Gaps = 30/527 (5%)

Query: 109 LGNAYAAAGRHEDAADAFEKSLRLQPDDASS----HNNFGNALHALGRHTEAIAAFRRTI 164
           LG+  AA GR  +AA A++++LRL P D+          G A +  GR  +A   +R  I
Sbjct: 43  LGSVAAAQGRFAEAALAWQQALRLLPPDSEEALALRYRLGRAFYEEGRFEDAFLLYRELI 102

Query: 165 E-------LRPGHAGALNNMGMSLNALGRAE-EAIPCFQTALAAEPRFVAAHFNLANTFD 216
           E       L    A AL  M  S    G+ + +A+   + AL  +P         A   +
Sbjct: 103 ESGWQLPELFVAAAAALQGMSPS----GKNDPQALALLEEALQRDPGQADTWHRKAALHE 158

Query: 217 ATGRHAEAVASFKAALALQPNLPPAIFGMGNALAALGRHAEALPYLERAVGLDPQFALAW 276
              +   A      AL L           G    A G+  EAL Y ++A+ L P+   A 
Sbjct: 159 RARQWDAARQCIHQALRLDDQRAQYWLAAGLVEHAQGQFEEALRYYDQALILAPELVDAH 218

Query: 277 LSLGTAHQALGAHGPAVRALDQALRLRPDLASAHMNRALAWLAQRDFARGLPEYEWRLQT 336
           +S GT    L  H  A+ +  +ALR+    A AH+N AL+ L      +  P YEWR + 
Sbjct: 219 VSRGTTLARLRQHEEAIDSYRRALRIDDKDADAHLNLALSLLVLGRLEQAWPLYEWRWEG 278

Query: 337 MAQPVIQ--TLPRWHG-EPIAERTLLVHAEQGFGDTLQFVRFVPLVAQRAARVVLEVQPQ 393
            +    +  T+P W+G   +A + +L+ AEQG GDT+QF R+V L+ Q  A+VVLEV   
Sbjct: 279 RSADPYRHATIPAWNGGSSLAGKRILLWAEQGQGDTIQFSRYVALILQAGAQVVLEVPAS 338

Query: 394 LLPLLAPAAQAWRVTLIAQGAPRPAADLHCPLLSLPLALGTTFDTIPQRTPYLSVPAAYG 453
           LL L+   A    +TL+A G P P  D   PL+SLPL   T  D IP   PYL    A  
Sbjct: 339 LLALMHSLAVPTPLTLVAMGEPLPEVDFQLPLMSLPLVCNTRADDIPAAVPYLCADPARR 398

Query: 454 RKWRGSLGGQAKR-----KIGIAWSGRIQQ--NETRSMQLAALDPL-FALEGIDWIVLQP 505
             W   L   A R     +IG+  SG      +  RS++L+   PL  A   +D+ V+QP
Sbjct: 399 ILWEERLATLAPRSPARMRIGLVCSGNAGNVNDARRSIELSRFAPLALARPQLDFFVIQP 458

Query: 506 ELSAEERMALDTHPRAASIHRFDKRIGDFADTAAIIERLDAVVSIDTSIAHVAGALRKPL 565
           +L   +R   +  P     H     I DFADTAA++  +D V+S+DT+ AH+AGA+  P+
Sbjct: 459 DLRQADRQWCEQQP---GWHWVGAAINDFADTAAVLAGMDLVISVDTAAAHLAGAMACPV 515

Query: 566 WLMLPFAADWRWFAGETGSPWYPGATLVRQPQPGAWGDVVEAVANAL 612
           W+ LP+A DWRW      SPWYP A L RQ QPGAW DV+  +  AL
Sbjct: 516 WIALPYAPDWRWLLNAADSPWYPTARLFRQQQPGAWDDVILTLRAAL 562



 Score = 84.7 bits (208), Expect = 1e-20
 Identities = 73/247 (29%), Positives = 113/247 (45%), Gaps = 10/247 (4%)

Query: 26  ATLDGNPAHVDALHLLGVLRHQQGQHAEAAELVRRAVNLRPEDA----ALQLNLGNALKA 81
           A LD +P   DALHLLG +   QG+ AEAA   ++A+ L P D+    AL+  LG A   
Sbjct: 28  ALLDAHPRDKDALHLLGSVAAAQGRFAEAALAWQQALRLLPPDSEEALALRYRLGRAFYE 87

Query: 82  LGQIDDAIEQFRNALTLA---PSFPMAHYNLGNAYAAAGRHEDAADA-FEKSLRLQPDDA 137
            G+ +DA   +R  +      P   +A        + +G+++  A A  E++L+  P  A
Sbjct: 88  EGRFEDAFLLYRELIESGWQLPELFVAAAAALQGMSPSGKNDPQALALLEEALQRDPGQA 147

Query: 138 SSHNNFGNALHALGRHTEAI-AAFRRTIELRPGHAGALNNMGMSLNALGRAEEAIPCFQT 196
            + +    ALH   R  +A      + + L    A      G+  +A G+ EEA+  +  
Sbjct: 148 DTWHRKA-ALHERARQWDAARQCIHQALRLDDQRAQYWLAAGLVEHAQGQFEEALRYYDQ 206

Query: 197 ALAAEPRFVAAHFNLANTFDATGRHAEAVASFKAALALQPNLPPAIFGMGNALAALGRHA 256
           AL   P  V AH +   T     +H EA+ S++ AL +      A   +  +L  LGR  
Sbjct: 207 ALILAPELVDAHVSRGTTLARLRQHEEAIDSYRRALRIDDKDADAHLNLALSLLVLGRLE 266

Query: 257 EALPYLE 263
           +A P  E
Sbjct: 267 QAWPLYE 273



 Score = 42.7 bits (99), Expect = 4e-08
 Identities = 27/77 (35%), Positives = 39/77 (50%)

Query: 12  HRDGRLDDAERGYRATLDGNPAHVDALHLLGVLRHQQGQHAEAAELVRRAVNLRPEDAAL 71
           H  G+ ++A R Y   L   P  VDA    G    +  QH EA +  RRA+ +  +DA  
Sbjct: 192 HAQGQFEEALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRRALRIDDKDADA 251

Query: 72  QLNLGNALKALGQIDDA 88
            LNL  +L  LG+++ A
Sbjct: 252 HLNLALSLLVLGRLEQA 268



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 221 HAEAVASFKAALALQPNLPPAIFGMGNALAALGRHAEALPYLERAVGLDP 270
           +AEA A   A L   P    A+  +G+  AA GR AEA    ++A+ L P
Sbjct: 19  YAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAWQQALRLLP 68