Pairwise Alignments

Query, 615 a.a., tetratricopeptide repeat protein from Burkholderia phytofirmans PsJN

Subject, 528 a.a., hypothetical protein from Herbaspirillum seropedicae SmR1

 Score =  216 bits (550), Expect = 2e-60
 Identities = 171/508 (33%), Positives = 245/508 (48%), Gaps = 27/508 (5%)

Query: 112 AYAAAGRHEDAADAFEKSLRLQPDDASSHNNFGNALHALGRHTEAIAAFRRTIELRPGH- 170
           A   A + E A  A +++L L P     +    + L  +G   EAIAA    ++L P + 
Sbjct: 21  ALRGAQQAEAALAALDQALALDPSFLPLYMQRADLLQEMGALPEAIAACAACLDLAPDYD 80

Query: 171 -AGALNNMGMSLNALGRAEEAIPCFQTALAAEPRFVAAHFNLANTFDATGRHAEAVASFK 229
            A AL+   +   A     +      +  AA      A   L     A      A+AS +
Sbjct: 81  EARALHRSLLQRWATQCELQTADEGASGSAALIDLARARLQLDQPLPALAAVERALASGQ 140

Query: 230 AALALQPNLPPAIFGMGNALAALGRHAEALPYLERAVGLDPQFALAWLSLGTAHQALGAH 289
           A LAL            + L  L RH EAL     A   D   AL   ++    + +G  
Sbjct: 141 AGLALHAL-------HADILLRLNRHEEALECYPPAADEDQARALHAFNMADILRRMGRI 193

Query: 290 GPAVRALDQALRLRPDLASAHMNRALAWLAQRDFARGLPEYEWRL---QTMAQPVIQTLP 346
             A  A +QALR  PD   A + RA   L+Q+ +A G   +E R    +   + +    P
Sbjct: 194 EQAQAAFEQALRWHPDFPEAEVGRAHMLLSQQHYAEGWRAHEARFGIAELARRGIDSPRP 253

Query: 347 RWH-GEPIAERTLLVHAEQGFGDTLQFVRFVPLVAQRAARVVLEVQPQLLPLLAPAAQAW 405
           RW  GEP+  + +L+ AEQG GDTLQF R++PLVAQ+AA V L     LL +LAP     
Sbjct: 254 RWRAGEPVRGKRVLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCAPASLLAVLAPCLP-- 311

Query: 406 RVTLIAQGAPRPAADLHCPLLSLPLALGTTFDTIPQRTPYLSVPAAYGRKWRGSLGG--- 462
           +V  +A     P  DLH  LLSLPL LG         +PYL+      ++W+  L     
Sbjct: 312 QVRCMANPGEAPDHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQQWQAYLSALWP 371

Query: 463 --QAKRKIGIAWSGR--IQQNETRSMQLAALDPLFALEGIDWIVLQPELSAEERMALDTH 518
               + ++GIAW+GR     + +R + L AL PL+ L   D++ LQ E+ A ++ A  T 
Sbjct: 372 AMPRRPRLGIAWAGRQYATVHHSRDIPLDALAPLWTLPA-DFVSLQVEVPAGDQAAHAT- 429

Query: 519 PRAASIHRFDKRIGDFADTAAIIERLDAVVSIDTSIAHVAGALRKPLWLMLPFAADWRWF 578
             A  +H     + D+ADTAA++  LD V+S+DT++ H+AGAL  P  L L +  +WRW 
Sbjct: 430 -LAQRLHT--PTLVDWADTAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYDGEWRWG 486

Query: 579 AGETGSPWYPGATLVRQPQPGAWGDVVE 606
              + +PWYP   L+RQ + G WG VVE
Sbjct: 487 VKGSQTPWYPSLQLLRQRERGQWGPVVE 514



 Score = 39.3 bits (90), Expect = 4e-07
 Identities = 38/135 (28%), Positives = 56/135 (41%)

Query: 1   MQPVFDRAFAAHRDGRLDDAERGYRATLDGNPAHVDALHLLGVLRHQQGQHAEAAELVRR 60
           + P +D A A HR      A +    T D   +   AL  L   R Q  Q   A   V R
Sbjct: 75  LAPDYDEARALHRSLLQRWATQCELQTADEGASGSAALIDLARARLQLDQPLPALAAVER 134

Query: 61  AVNLRPEDAALQLNLGNALKALGQIDDAIEQFRNALTLAPSFPMAHYNLGNAYAAAGRHE 120
           A+       AL     + L  L + ++A+E +  A     +  +  +N+ +     GR E
Sbjct: 135 ALASGQAGLALHALHADILLRLNRHEEALECYPPAADEDQARALHAFNMADILRRMGRIE 194

Query: 121 DAADAFEKSLRLQPD 135
            A  AFE++LR  PD
Sbjct: 195 QAQAAFEQALRWHPD 209



 Score = 32.0 bits (71), Expect = 7e-05
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 37  ALHLLGVLRHQQGQHAEAAELVRRAVNLRPEDAALQLNLGNALKALGQIDDAIEQFRNAL 96
           ALH   +LR    +H EA E    A +     A    N+ + L+ +G+I+ A   F  AL
Sbjct: 147 ALHADILLR--LNRHEEALECYPPAADEDQARALHAFNMADILRRMGRIEQAQAAFEQAL 204

Query: 97  TLAPSFP-----MAHYNLGNAYAAAG 117
              P FP      AH  L   + A G
Sbjct: 205 RWHPDFPEAEVGRAHMLLSQQHYAEG 230