Pairwise Alignments

Query, 783 a.a., DNA-dependent helicase from Burkholderia phytofirmans PsJN

Subject, 721 a.a., DNA-dependent helicase II (RefSeq) from Shewanella amazonensis SB2B

 Score =  632 bits (1630), Expect = 0.0
 Identities = 354/789 (44%), Positives = 484/789 (61%), Gaps = 83/789 (10%)

Query: 4   LLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNK 63
           LL  LN +Q  AV  P    L+LAGAGSGKTRVL  RIAWL+Q    SP +ILAVTFTNK
Sbjct: 6   LLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLLQVENQSPYSILAVTFTNK 65

Query: 64  AAREMMSRLSALLPIDTRGMWIGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKR 123
           AA EM  R+  ++  +T  MWIGTFHGL +R+LR H +DAGLP +FQI+D+ DQ   +KR
Sbjct: 66  AAAEMRERVEKIVGHNTGRMWIGTFHGLAHRLLRTHWQDAGLPQSFQIMDSDDQQRLLKR 125

Query: 124 LMKGLNIDDEKYPAKNLQYFINNAKEQGLRPKDVDATD-NFNRKFVELYEAYDQQCQREG 182
           ++K +N+D+++YP + +  +IN  K+QGLRP  +DA      +K +ELY  Y   C R G
Sbjct: 126 ILKSMNLDEKQYPPRLVAGYINGKKDQGLRPAHIDAGPFPMEQKLLELYRIYQDSCDRAG 185

Query: 183 VVDFPELLLRCYELLAHNPPLRAHYQARFRHILVDEFQDTNKLQYAWLKMLAGQTNSIFA 242
           +VDF E+LLR +EL  + P L AHYQ RFRHILVDEFQDTN +QYAW+++LAG T ++  
Sbjct: 186 LVDFAEILLRAHELWLNKPHLLAHYQDRFRHILVDEFQDTNAIQYAWIRVLAGNTANVMI 245

Query: 243 VGDDDQSIYAFRGANVGNMRDFEHEFNVRHLIKLEQNYRSHGHILDAANQLIANNSRRLG 302
           VGDDDQSIY +RGA + N+  F  +F     I+LEQNYRS G+IL A+N+LIANN  R+G
Sbjct: 246 VGDDDQSIYGWRGAQIENLHRFLQDFPGAKTIRLEQNYRSTGNILKASNELIANNPDRMG 305

Query: 303 KNLRTDAGHGEPVRVYESATDSQEASWIVEEIKALISTGTSRSEIAILYRSNAQSRTIEH 362
           K L T+   GEP+ +Y +  +  EA +IV  I      G    E AILYRSNAQSR +E 
Sbjct: 306 KELWTEDKDGEPISLYCAFNEMDEARFIVGRISDWQDKGGMLGECAILYRSNAQSRVLEE 365

Query: 363 TLVNAGIAYRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQ 422
            L++ G+ YR+YGGLRFFERQE+K A+ YLRLI N +DD AF RVVN P RGIG R+++ 
Sbjct: 366 ALLHKGMPYRIYGGLRFFERQEIKDAMGYLRLISNRDDDAAFERVVNTPARGIGERTLDI 425

Query: 423 LADAAR-----LYNCSMAAAIPYV-AGKAGSSLAAFANLVGKMRAETQQMSLPETVEYVV 476
           L   AR     L+  S+      V +G+A +++  F +L+ ++R++T ++ L    ++V+
Sbjct: 426 LRSTARKEQLTLWQTSLRLLEEKVLSGRAANAVKGFLDLIVQLRSDTDELPLYRVADHVI 485

Query: 477 RTSGLSEFYQNER--EGQDRLENLQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPE 534
           + SGL   Y+ E+    Q R+ENL+ELV AA +F   E                     E
Sbjct: 486 QHSGLKAMYEAEKGENAQARVENLEELVTAARSFEMPE---------------------E 524

Query: 535 LAVATDDPNTVVLDAPGIADPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVH 594
           L                        + M  L  FLSHA+LEAG+ QA A  +AVQLMT+H
Sbjct: 525 L------------------------EDMGELNAFLSHAALEAGEGQADAHTDAVQLMTLH 560

Query: 595 AAKGLEFTAVFITGLEEGLFPHENSAMESDGLEEERRLMYVAITRAKERLYLSFAQSRML 654
           +AKGLEF  VF+ G+EEG+FP + +  E D LEEERRL YV +TRA ++LY+++A+SR +
Sbjct: 561 SAKGLEFPMVFMAGVEEGIFPSKLALEEGDRLEEERRLCYVGMTRAMQKLYITYAESRRI 620

Query: 655 HGQTRYNIRSRFFDELPQETLKWLTPKVEAGARWGGRSDNAGYGRDWFARPGYTGPASST 714
           +G+  Y   SRF  E+P E ++ +  K +                             S 
Sbjct: 621 YGREDYARPSRFIREIPPEYVEEIRLKAQV----------------------------SA 652

Query: 715 PAQLPAFANEQRA-AETGFRVGQQVFHTKFGEGTITALEGGGADAKAQVKFKRHGEKWLA 773
           P     FA+ Q+   ++G ++G +V H KFGEGT+T  EG G  A+ QV+F   G KWL 
Sbjct: 653 PLVANRFAHAQQTFNDSGLKIGGRVRHFKFGEGTVTNYEGSGPQARVQVQFDDFGSKWLV 712

Query: 774 LAVAKLQAV 782
           ++ AKL+++
Sbjct: 713 VSYAKLESL 721