Pairwise Alignments

Query, 458 a.a., DNA repair protein RadA from Burkholderia phytofirmans PsJN

Subject, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  496 bits (1277), Expect = e-145
 Identities = 255/459 (55%), Positives = 332/459 (72%), Gaps = 10/459 (2%)

Query: 1   MAKPKTLYICSECGGQSPKWAGQCPSCNAWNTLVESVAEAPSTHRFQ-----ALAKSAPV 55
           MAK KT Y+C+ECG   P+W GQC +C+ WNT+ E    A S  R       A A S+ V
Sbjct: 1   MAKNKTAYVCNECGQDFPRWQGQCSACHEWNTITEVRLGAASPGRGTKFAGYAGAGSSEV 60

Query: 56  RRLADIEASDVPRFSTGVSEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIAADK 115
           + L  I+ + +PR  +   E DRVLGGG+VPG  +LIGG PG GKSTLLLQ+L  +A   
Sbjct: 61  KTLDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCHLAEQM 120

Query: 116 RALYISGEESAAQIALRAQRLSLLEPGSKASELQLLAEIQLEKIQATISEQRPDVAVIDS 175
            ALY++GEES  Q+A+RA RL L       ++L++L+E  +E+I     ++ P V V+DS
Sbjct: 121 PALYVTGEESLQQVAMRAHRLGL-----PTNKLRMLSETSVEQICEIALQESPKVIVVDS 175

Query: 176 IQTVYSDALTSAPGSVAQVRECAAQLTRIAKQSGTTIIMVGHVTKEGALAGPRVLEHIVD 235
           IQ ++   + S+PGSV+QVRE A+ LTR AKQ G  +IMVGHVTK+G+LAGP+VLEH +D
Sbjct: 176 IQVMHMSDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPKVLEHCID 235

Query: 236 TVLYFEGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQSVPGS 295
             + FEGD+ S YR +R+ KNRFGA+NELGVFAMTERGL+ VANPSA+FLS+ E+   GS
Sbjct: 236 CSVMFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEESSGS 295

Query: 296 CVLVTQEGTRPLLVEVQALVDSANAPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDV 355
            V+V  EGTRPLLVE+Q LVD++   NPRR+AVG++ NRLAMLLAV+HRH G+   DQDV
Sbjct: 296 LVMVVWEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDV 355

Query: 356 FLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLVVFGEVGLAGEIRPSPRGQERLKE 415
           F+N VGGVK+TE +ADL +LLA+ SS R   LP  LVVFGEVGL+GEIRP P GQERL E
Sbjct: 356 FVNVVGGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQERLVE 415

Query: 416 AAKLGFSVAVIPKANAPKQPIEGLQVVAVERIEQAIDRV 454
           AAK GF  A++P+AN PK+P  G++VV V ++ +A++ +
Sbjct: 416 AAKHGFKRAIVPRANVPKKPPVGMEVVGVSKLSEALEAI 454