Pairwise Alignments

Query, 688 a.a., DNA ligase from Burkholderia phytofirmans PsJN

Subject, 669 a.a., DNA ligase, NAD-dependent (RefSeq) from Shewanella loihica PV-4

 Score =  701 bits (1809), Expect = 0.0
 Identities = 367/666 (55%), Positives = 477/666 (71%), Gaps = 11/666 (1%)

Query: 21  LRAELERANYAYYVLDQPDLPDAEYDKLFKELESIETEHPDLIVPDSPTQRVGGEAASGF 80
           L  EL + NY YYV D P +PDAEYD+L + L+ +E EHP+L + DSPTQRVGGEA S F
Sbjct: 11  LTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALADSPTQRVGGEALSKF 70

Query: 81  EPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPPVPVDYAAELKFDGLAISLRY 140
             V H +PMLSL+N F++E+  AF KRVGD L      P  P  +  E K DGLA+S+ Y
Sbjct: 71  NQVTHLKPMLSLDNVFSEEEFNAFYKRVGDKL------PDTPA-FCCEPKLDGLAVSILY 123

Query: 141 VDGAFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPHVLDVRGEVLMFKRDFERLN 200
            DG F +A+TRGDGT GE++TENVRTI+S+PL+L+G   P +L+VRGEV M K  FE +N
Sbjct: 124 RDGVFERAATRGDGTVGEDITENVRTIKSVPLRLRGSGFPPLLEVRGEVFMPKAAFEAVN 183

Query: 201 ERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLEGMEMP--ATHSELL 258
           ++ RA  +K F NPRNAAAGSLRQLDSKITA R L+F+AY +GV+E    P  A+H E L
Sbjct: 184 DKARAKGEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPETWPLAASHFEQL 243

Query: 259 DWYKELGLPVNSERAVVQGAEGLLGFFHGVGEKREKLPYDIDGVVYKVNRRDEQDALGFV 318
              KE G PV+SE  V      +L ++  +  +R +L Y+IDGVV KVN   +Q  LGFV
Sbjct: 244 VQLKEWGCPVSSEVKVCADIPSVLAYYQDILTRRSELAYEIDGVVLKVNDIAQQQTLGFV 303

Query: 319 SRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNEDE 378
           ++APR+A A+KFPAQE +T+L  +D QVGRTGA+TPVARL+PVFVGG TV+NATLHN DE
Sbjct: 304 AKAPRWATAYKFPAQEEITQLEGVDFQVGRTGAVTPVARLQPVFVGGVTVSNATLHNADE 363

Query: 379 VRRKDIRIGDTVIVRRAGDVIPEVVSALLDRRPSDAREFVMPTQCPVCGSSIERLPDEAI 438
           + R  + IGD+VI+RRAGDVIP+VV+ + ++RPSDA+    P QCPVCGS +ER+  EA+
Sbjct: 364 IARLGVMIGDSVIIRRAGDVIPQVVAVVPEKRPSDAQAIQFPPQCPVCGSDVERVEGEAV 423

Query: 439 ARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLFNIGFATLA 498
           ARCTGGL C AQRK+A+ HFA R+ALDIDG+G+K+++QL+++ LV +PADLF +  + + 
Sbjct: 424 ARCTGGLVCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVASPADLFKLTASAIT 483

Query: 499 ELDRFAEKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASV 558
            LDR   KSA NL+++LE AK TT ARF+Y+LGIR VGE+TA +LA +F +L+ +  A  
Sbjct: 484 MLDRMGMKSATNLVNALEAAKQTTFARFLYSLGIREVGEATAANLANYFKTLEHLKQADA 543

Query: 559 EALLEVNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTV 618
           E  ++V+DVG +VA+ +  FF + HN  VI+ L   G V WP+     +     L G+T 
Sbjct: 544 ETFMKVDDVGVIVAQHLVHFFEQPHNLEVIDGLLQAG-VHWPDIEEVAEEALS-LKGQTW 601

Query: 619 VLTGTLPSLAREEAKEMLEAAGAKVAGSVSKKTDYLVAGADAGSKLAKAEELGVPVLDED 678
           VLTGTL  L R +AK  L+A GAKVAGSVSK TD LVAG  AGSKL KA+ELGV V+DE 
Sbjct: 602 VLTGTLTQLNRNDAKAKLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQELGVKVIDEA 661

Query: 679 GMRKLL 684
            +  +L
Sbjct: 662 ELLAIL 667