Pairwise Alignments

Query, 409 a.a., exopolysaccharide biosynthesis protein from Burkholderia phytofirmans PsJN

Subject, 789 a.a., putative capsule polysaccharide export protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 80.1 bits (196), Expect = 2e-19
 Identities = 68/233 (29%), Positives = 106/233 (45%), Gaps = 24/233 (10%)

Query: 118 LTTPQGSTLSAGGNTTQSIGGALQQPYTAALPGQADPYGQTIAADGTIFFPFVGRIKAAG 177
           L TP    L  G      I GA Q               Q I+ +GTI    +G +  +G
Sbjct: 122 LATPANYRLGPGDEVIIDIWGASQNTIR-----------QQISPEGTINIQKIGPVNLSG 170

Query: 178 KTVGEVRDQLSTGLVRYIR------NPQVDVRVL--SYRGQKVQVTGEVKTPGPLAMSDV 229
            TV    D L   L +         +P  D+R+   + R  ++ V GEV  PG  A+S  
Sbjct: 171 MTVSAANDYLKNALNKIYNGLNNTTDPTSDIRLTLGNIRTIQINVMGEVVQPGTYALSSF 230

Query: 230 PLTLVDAITRSGGTNADADIQRVRLTRNNK-LYVLDADRMLDRGDTTQNVMLQNGDVINV 288
             T+  A+ R+GG +    ++ V+L RN K +  +D    + +G+T  ++ LQ GDV+ V
Sbjct: 231 S-TVFHALYRAGGVSDIGSLRNVQLVRNGKNIATIDVYEFIMKGNTQDDIRLQEGDVVIV 289

Query: 289 PDRTDSRVFVMGEVKTPIQLPIIKGRMTIADALTQGGGILDTDANPRQIFVMR 341
           P   D  V + G+VK P++  + K    +A  +   GG  + DA  R + V+R
Sbjct: 290 P-AYDVLVKISGKVKRPMRFEMKKDE-NLATLIKYAGG-FEADAYTRSLRVVR 339



 Score = 53.9 bits (128), Expect = 2e-11
 Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 13/188 (6%)

Query: 204 VLSYRGQKVQVTGEVKTPGPLAMSDVPLTLVDAITRSGGTNADADIQRVRLTRNNK---L 260
           +L+    K+++ G V  PG   +S    T+ + +  + G   DA + R  L R  +    
Sbjct: 371 ILNRFTNKLEIRGAVYRPGIYQLSGKLNTIRELVHEAQGLTGDAFLNRAVLYRQREDLTS 430

Query: 261 YVLDADRMLDRGDTTQNVMLQNGDVINVPDRTD----SRVFVMGEVKTPIQLPIIKGRMT 316
            V+  D       T+ N+ L   D++ +P   D      V V GEV  P   P     MT
Sbjct: 431 EVVQIDIKSIMNGTSPNLALMKNDILYIPSIHDLEDRGNVTVHGEVAHPDSYPYADN-MT 489

Query: 317 IADALTQGGGILDTDAN-----PRQIFVMRGMKDHPTTPDVYRLDMTQPDAIMLSSQFQL 371
           + D + Q GG+ +  +       R+I   R   D+ T   +Y   +     I     F L
Sbjct: 490 LEDLIIQAGGLKEAASTVRIDVSRRIKNPRSTADNDTIGQMYTFSLKDGFVIDGQPGFIL 549

Query: 372 QPLDVVYV 379
           QP D VYV
Sbjct: 550 QPYDEVYV 557



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 36/164 (21%)

Query: 210 QKVQVTGEVKTPGPLAMSDVPLTLVDAITRSGGTNADADIQRVRLTR----NNKLYVLDA 265
           Q V + GE+   G  AM++    L D + ++GG  + A ++  +LTR      K  + D 
Sbjct: 567 QNVVIDGEILFGGNYAMTNREERLSDLVNKAGGPTSLAYLRGAKLTRVASAGEKKRMGDV 626

Query: 266 DRMLDR--------------GDT----------------TQNVMLQNGDVINVPDRTDSR 295
            R++ R               DT                + +++L+ GDV+ +P  T++ 
Sbjct: 627 IRLMSRQLGEAMIDSLGIGVEDTFTVGIDLEKALTNPKGSADLVLREGDVVFIPKNTNT- 685

Query: 296 VFVMGEVKTPIQLPIIKGRMTIADALTQGGGILDTDANPRQIFV 339
           V + G V  P  +  +KG+  +   L Q GG  D     ++  V
Sbjct: 686 VTINGAVMVPNTVSYMKGK-NVDYYLNQAGGYSDNARKSKKFIV 728



 Score = 35.0 bits (79), Expect = 8e-06
 Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 17/191 (8%)

Query: 195 IRNPQVDVRVLSYRGQKVQVTGEVKTPGPLAMSDVPLTLVDAITRSGGTNADADIQRVRL 254
           IR  + DV ++      V+++G+VK P    M      L   I  +GG  ADA  + +R+
Sbjct: 279 IRLQEGDVVIVPAYDVLVKISGKVKRPMRFEMKKDE-NLATLIKYAGGFEADAYTRSLRV 337

Query: 255 TR-NNKLYVLDADRMLDRGDTTQNVMLQNGDVIN---VPDRTDSRVFVMGEVKTPIQLPI 310
            R N + Y ++  + +D    T    ++NGDV+    + +R  +++ + G V  P  +  
Sbjct: 338 VRQNGEEYEVNTVKDMDYSIYT----MRNGDVVTAEAILNRFTNKLEIRGAVYRP-GIYQ 392

Query: 311 IKGRMTIADALTQGGGILDTDANPRQIFVMRGMKDHPTTPDVYRLDMTQPDAIM--LSSQ 368
           + G++     L      L  DA   +  + R  +D   T +V ++D+    +IM   S  
Sbjct: 393 LSGKLNTIRELVHEAQGLTGDAFLNRAVLYRQRED--LTSEVVQIDI---KSIMNGTSPN 447

Query: 369 FQLQPLDVVYV 379
             L   D++Y+
Sbjct: 448 LALMKNDILYI 458