Pairwise Alignments

Query, 833 a.a., ribonuclease R from Burkholderia phytofirmans PsJN

Subject, 718 a.a., ribonuclease R (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  347 bits (891), Expect = 1e-99
 Identities = 214/694 (30%), Positives = 359/694 (51%), Gaps = 52/694 (7%)

Query: 64  DGQIRLDQRNLYQLTHPSNFVAGRVQGHRDGYGFLIRDDGQDDLFLPTAEMQKVMHNDRV 123
           D  I   ++  ++L +    + G  Q   +G    I + G D +F+        M+ND+V
Sbjct: 67  DDYISEIEKGKFRLNNHGTEMIGTFQRKSNGKNSFIPEGGGDPIFVAERNSAHAMNNDKV 126

Query: 124 LARIVGYDRRGRPEGHIVEVTDRANKRVIGRLLNENGALIVAPEDKRIGHDILI-QQNTK 182
                   +    EG ++E+ +RAN   +G L        +  E++ + +DI I ++  K
Sbjct: 127 KITFYAKRKNKDAEGEVIEILERANDTFVGTLEVAKSYAFLVTENRTLANDIFIPKEKLK 186

Query: 183 KAKVGQVVVVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSQAALDE 242
             K G   +V++T++P +   P+G+V+++LG   D   E+   + ++G+P+ + +A    
Sbjct: 187 GGKTGDKAIVKVTEWPDKAKNPIGQVIDILGVAGDNTTEMHAILAEFGLPYVYPKAVETA 246

Query: 243 ASRLPDEVRPVDARHRIDLRDVPLVTIDGEDARDFDDAVYCEPVQVGRGEGFRLIVAIAD 302
           A ++P E+ P +   R D R V   TID +DA+DFDDA+   P++ G  E   + V IAD
Sbjct: 247 ADKIPAEITPEEIARREDFRKVTTFTIDPKDAKDFDDALSIRPIKDGLWE---VGVHIAD 303

Query: 303 VSHYVHPKSGLDADAIERSTSVYFPRRVIPMLPEKLSNGLCSLNPHVDRCVLVCDMIITA 362
           V+HYV     +D +A +R+TSVY   R IPMLPE+L N +CSL P+ ++        IT 
Sbjct: 304 VTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITE 363

Query: 363 RGEVKAYQFYPGVMHSAARLTYTEVAAVLKNTKGPEATRRAALLPQLQNLYGVYKSLFAA 422
           +GEV+  +    V++S  R TY E   +++       T+      ++  L  + K+L   
Sbjct: 364 KGEVRDSRIVHTVINSDRRFTYEEAQQIIE-------TKTGDFKEEVLMLDTIAKALREK 416

Query: 423 RQKRGAIDFDTTETYIVCNAQGKIEQIIPRTRNDAHKLIEECMLAANVCAADFLKR---N 479
           R   GAI+FD  E     + +GK   +  +   DA+KL+EE ML AN   A+ + R   N
Sbjct: 417 RFAAGAINFDRYEVKFEIDEKGKPISVYFKESKDANKLVEEFMLLANRTVAEKVGRVPKN 476

Query: 480 KHPGL--FRVHAGPTAEKLENLRTFLRGMG--LTLAGGDKPHASDYAALMAQIRERPDAQ 535
           K P +  +R+H  P  EKLENL  F+   G  +  +G     +     L+  I  + +  
Sbjct: 477 KKPKVLPYRIHDLPDPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEEN 536

Query: 536 MLQTMLLRSMQQAVYSPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILQGRKYQP 595
           +++T+ +R+MQ+A YS  NIGH+GLA++ Y HFTSPIRR+PD++ HR +   + G +   
Sbjct: 537 LIETVSIRAMQKARYSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLVTKYMDGGRSVS 596

Query: 596 EPPQGVELNTALSPRARAMQQADDEKRGRVRGNNVAIWEELGLHCSANERRADEASRDVE 655
           E                                  + +E+L  H S  E+ A  A R   
Sbjct: 597 E----------------------------------SKYEDLCDHSSNMEQIAANAERASI 622

Query: 656 AWLKCYFMRDKLGEEYGGMVNGVTSFGIFVQLDSLFIEGLVHVTELGSDYFQYDEIKNEL 715
            + +  FM ++LG+ Y G+++GVT +G++V+L+    EG+V + +L  DY+++DE    L
Sbjct: 623 KYKQVEFMSERLGQIYDGVISGVTEWGLYVELNENKCEGMVPIRDLDDDYYEFDEKNYCL 682

Query: 716 RGERTGIRYRLSDRVRVQVSRVDLDARKIDFRLV 749
           RG R    Y L D + ++V+R +L+ +++DF L+
Sbjct: 683 RGRRKNKIYSLGDAITIRVARANLEKKQLDFALI 716