Pairwise Alignments

Query, 311 a.a., tRNA pseudouridine synthase B from Burkholderia phytofirmans PsJN

Subject, 304 a.a., tRNA pseudouridine synthase B (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  189 bits (481), Expect = 5e-53
 Identities = 107/251 (42%), Positives = 149/251 (59%), Gaps = 2/251 (0%)

Query: 12  RALDGVLLLDKPLGLSSNDALIRAKRLYLAKKAGHTGTLDPLATGLLPLCFGEATKFSQD 71
           RA+ G +++DKP GLSSN  + + +  + A+KAGH GTLDP ATG+L +  GEATK    
Sbjct: 8   RAVSGWIVIDKPAGLSSNAVVGKVRWAFDAQKAGHAGTLDPEATGVLAIALGEATKTVPF 67

Query: 72  LLEANKTYEATMRLGVRTTTGDAEGEAIDTREVTCDEAAILAVLPTFLGEITQVPPMYSA 131
           + +A K YE T+RLG  T T D EGE  +T +    +  I A LP F G+I QVPP +SA
Sbjct: 68  VTDALKAYEFTVRLGQATNTDDGEGEVTETSDARPSDDEIRAALPPFEGDILQVPPQFSA 127

Query: 132 LKRDGKPLYEYARAGQTVEREGRQVTILALEMLACALPD-VTFRVTCSKGTYVRTLAEDI 190
           +K DG+  Y  ARAGQ +E   R + + +L  +A   PD VT  + C KG YVR++A D+
Sbjct: 128 VKIDGERAYARARAGQEMEIAARPLYVDSLTFIARPDPDHVTLEMVCGKGGYVRSIARDL 187

Query: 191 GEALGCGAHLVALRRTGVGALTLDNSVTLDALSDAAESER-DAWLQPVDALLSTFPLVRL 249
           G ALGC  H+ +LRRT  G   L ++  L+ L D A+    DA L P++  L+  P +  
Sbjct: 188 GRALGCFGHVKSLRRTWSGPFELSDATPLETLEDLAKDPALDAHLMPLETGLADLPELPC 247

Query: 250 NEDATRRFLHG 260
             +   R  +G
Sbjct: 248 TPEGAARMRNG 258