Pairwise Alignments

Query, 346 a.a., porin from Burkholderia phytofirmans PsJN

Subject, 374 a.a., porin from Herbaspirillum seropedicae SmR1

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 109/391 (27%), Positives = 171/391 (43%), Gaps = 65/391 (16%)

Query: 2   KTKTLVSGALMLACAGAHAQSKIWLSGYVDLNIEHLISSGSGGNVT-RMSSGGLNNSRFN 60
           K+  L+  A + +   A AQS + + G VD +I +L ++ + GN   RM +G + NSR  
Sbjct: 3   KSSLLLLAAGLTSGGAAFAQSNVTIYGIVDTSIHYLSNANAQGNSNVRMDNGAIANSRIG 62

Query: 61  LSGVEDLGGGNKAVFTIEPMFSANTGVQ----SAQFRQSFVGLKGNWGEITMGRQFTPSY 116
             G EDLGGG KA+F +E  FS++TG      S   RQS+VGL+G +G++ +GRQ TP +
Sbjct: 63  FKGTEDLGGGLKAMFQLENGFSSDTGAMQQGGSLFGRQSWVGLQGGFGKVRVGRQNTPLF 122

Query: 117 -WIAGYADPSWAADFSMVNNMEFFYASYRVDNAIQYKTPTFYGFTGRIMATTG-----VG 170
             +A + DP    +++  + +    +  R  N ++Y      G  G + A+         
Sbjct: 123 DLLADHFDPLTVGNYASNSWLPAAASLVRSPNMLRYD-----GDFGPVAASASWAFGEKA 177

Query: 171 DSTRAGRFLSTSIDYRHGPIFIGAVSELQYTRDIFRSSQIHSSRDNYFSAVYKFGGFEPT 230
            S R G   S+++ Y  GP+ +G     Q T     SS  H++ +   SA Y FG     
Sbjct: 178 GSVRTGSQFSSALRYTAGPLALG--GGYQQTVSSTNSSLKHTTWN--LSASYDFG----- 228

Query: 231 VIYHTYNGYYAFPPYVAFN----------SQGW-------DAQIGARWNIDG-------- 265
            +   + G+                    S GW       +   G +   +G        
Sbjct: 229 -VAKVFGGWLNIKDDSGLTGSVMAADGDVSNGWTTAGAANNGSTGVKRKDNGFFLGSSYK 287

Query: 266 -RNRVYLSVVHRHDDNNTSISSATGGV--------IGYI-YGLSKRTDLYATFAHVKHQH 315
             N + L+    +D +      +TG V        +G+  Y LSKRT LY T  + K + 
Sbjct: 288 ATNALTLTGAFYYDRSKNVSYVSTGNVGDGKRYTLVGWADYALSKRTQLYTTIDYNKAK- 346

Query: 316 DVPVPYPVTFQVYPNSGQNPSGFQFGIRHAF 346
           D  V Y +T     N   + +    GIRH F
Sbjct: 347 DAAV-YELTNSA--NGKNSLTTVGVGIRHIF 374