Pairwise Alignments

Query, 957 a.a., excinuclease ABC subunit A from Burkholderia phytofirmans PsJN

Subject, 953 a.a., excinuclease ABC, A subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 1155 bits (2989), Expect = 0.0
 Identities = 588/965 (60%), Positives = 734/965 (76%), Gaps = 24/965 (2%)

Query: 1   MEQIRIRGARTHNLKNVNLDLPRHKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           +++I +RGAR HNLK++++D+PR +LVVITGLSGSGKSSLAFDT+YAEGQRRYVESLSAY
Sbjct: 4   LKKIEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 63

Query: 61  ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARVGTPYC 120
           ARQFL +M+KPDVD I GLSPAISIEQK TS NPRSTVGTVTEI+DY+RLLFARVGTPY 
Sbjct: 64  ARQFLDMMQKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGTPYS 123

Query: 121 PDHEIPLEAQSVSQMVDAALALPEETKLMILAPVVANRKGEHVELFEEMQAQGFIRFRVR 180
           P   +P+EAQ V  MVD  +A+ E T+  +LAP++ +RKGE+ + F E++ QGF R +V 
Sbjct: 124 PATGLPIEAQQVQDMVDRVMAMEEGTRAYLLAPIIRDRKGEYRKEFLELRKQGFQRVKVD 183

Query: 181 SGGGTANEGVAKIYEVDSLPKLKKNDKHTIDVVVDRLKVRPDMKQRLAESFETALRLADG 240
                        +++DS P L K  +H IDVVVDR+ V+  ++ RLA+SF TAL LADG
Sbjct: 184 GA----------FHDLDSPPTLDKKFRHDIDVVVDRIVVKEGIETRLADSFRTALDLADG 233

Query: 241 RAIALEMDTDKE---HLFSSKFACPICSYSLQELEPRLFSFNNPMGACPECDGLGQITFF 297
            AI     T+ E   H FS KFACP+  +++ E+EPRLFSFN P GACP CDGLG   FF
Sbjct: 234 IAILETAPTEGEPERHTFSEKFACPVSGFTIPEIEPRLFSFNAPFGACPACDGLGVELFF 293

Query: 298 DPKRVVAHPSLSLAAGAVKGWDR-RNQFYFQMLQSLAAFYEFDIDTAVEDLPEKVRKILL 356
           D + VV   +L+LA GA+  W + ++ ++ Q + ++A  YEFD  T  + LPEKV+++ L
Sbjct: 294 DERLVVPDATLTLANGALAPWRKGKSPYFLQTINAIAKHYEFDPKTPWKALPEKVQEVFL 353

Query: 357 FGSGKQEIPFSYINERGRTSVREHVFEGIIPNLERRYRETDSVAVREELAKYQNNQPCPA 416
            GSG++EI F Y +E GR       FEG+IPN+ERRYRETDS  +REE  +YQNN+ C  
Sbjct: 354 RGSGEEEITFRY-DEGGRVYQVSRAFEGVIPNMERRYRETDSSWIREEFERYQNNRSCGT 412

Query: 417 CAGTRLRREARFVRIGSDGDARGIFEISGWPLRDALGYFQTL--RLEGSKREIADKVVKE 474
           C G RLR EA  V+I        + E+    +R+A  + +T+   L   K EIA  ++KE
Sbjct: 413 CGGYRLRPEALAVKIAG----LHVGEVVQMSIREAHDWCRTVPEHLSVQKNEIARAILKE 468

Query: 475 IVARLMFLNNVGLDYLSLERSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQR 534
           I  RL FLNNVGL+YL+L R+A TLSGGE+QRIRLASQIGSGLTGV+YVLDEPSIGLHQR
Sbjct: 469 IRERLGFLNNVGLEYLTLSRNAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQR 528

Query: 535 DNDRLIATLKHLRDLGNSVIVVEHDEDMIRMADYVVDMGPGAGEHGGMVIAEGTPKQVQA 594
           DNDRL+ TLK+LRD GN+VIVVEHDE+ +R ADYV D+GPGAG HGG V+A GTP Q+ A
Sbjct: 529 DNDRLLTTLKNLRDQGNTVIVVEHDEEAVREADYVFDIGPGAGVHGGQVVAHGTPAQIMA 588

Query: 595 NAASMTGQYMSGARNIEFPDERKAPDEKRLRIVEAYGNNLQHVSLDLPVGLLTCVTGVSG 654
           N AS+TG Y++G R I  P  R+  ++K++ + +A GNNLQ +++D P+G   CVTGVSG
Sbjct: 589 NPASITGDYLAGRREIPVPATRRKGNKKKVTVRKATGNNLQDLTVDFPLGKFVCVTGVSG 648

Query: 655 SGKSTLINDTLYHAVAHHLYGSATEPAPYESIEGLEHFDKVINVDQSPIGRTPRSNPATY 714
            GKSTL  +TL+   +  L G+   PAP E+I+GLEH DKVI++DQ PIGRTPRSNPATY
Sbjct: 649 GGKSTLTIETLFKTASMRLNGARQTPAPCETIKGLEHLDKVIDIDQRPIGRTPRSNPATY 708

Query: 715 TGLFTPIRELFAGVPAAKERGYEAGRFSFNVKGGRCESCQGDGVLKVEMHFLPDVYVPCD 774
           TG FTPIR+ FAG+P A+ RGY+ GRFSFNVKGGRCE+CQGDGV+K+EMHFLPDVYV C+
Sbjct: 709 TGAFTPIRDWFAGLPEARTRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVECE 768

Query: 775 VCHGKRYNRETLDVQYKGKNISEVLDMTVENAYEFFKPVPVVARKLKTLLDVGLGYIRLG 834
            C GKRYNRETL+V +KGK+I++VLDMTVE+A EFFK VP +  K+  L+ VGLGYI++G
Sbjct: 769 TCKGKRYNRETLEVTFKGKSIADVLDMTVEDAQEFFKAVPSIREKMDALMRVGLGYIKVG 828

Query: 835 QSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIALLLEVIHRLRDQGNT 894
           Q ATTLSGGEAQRVKLS EL+KR TGRTLYILDEPTTGLHF D+  LLEV+H L +QGNT
Sbjct: 829 QQATTLSGGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHELVEQGNT 888

Query: 895 VVIIEHNLDVIKTADWVIDLGPEGGAGGGQIIAQGTPEQVAKSKASFTGKYLAPLL---K 951
           VV+IEHNLDVIKTADW+ID+GPEGG GGG ++A GTPEQVA+   S TG+YL P+L   K
Sbjct: 889 VVVIEHNLDVIKTADWLIDIGPEGGDGGGTLVATGTPEQVAEVAESHTGRYLKPMLAGAK 948

Query: 952 RAASK 956
           R A++
Sbjct: 949 RVAAE 953



 Score = 56.6 bits (135), Expect = 8e-12
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 15/121 (12%)

Query: 619 PDEKRLRIVEAYGNNLQHVSLDLPVGLLTCVTGVSGSGKSTLINDTLY-----------H 667
           P+ K++ +  A  +NL+ + +D+P   L  +TG+SGSGKS+L  DT+Y            
Sbjct: 2   PELKKIEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLS 61

Query: 668 AVAHHLYGSATEPAPYESIEGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAG 727
           A A        +P     ++ +      I+++Q    + PRS   T T ++  +R LFA 
Sbjct: 62  AYARQFLDMMQKP----DVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFAR 117

Query: 728 V 728
           V
Sbjct: 118 V 118