Pairwise Alignments

Query, 613 a.a., hypothetical protein from Burkholderia phytofirmans PsJN

Subject, 599 a.a., TPR repeat (NCBI) from Rhodospirillum rubrum S1H

 Score =  106 bits (264), Expect = 3e-27
 Identities = 76/258 (29%), Positives = 123/258 (47%), Gaps = 18/258 (6%)

Query: 362 AYIYLAQLSLEQKNEAAASDWLNKISPSSQQYVPAQITRAQLLAKQGKVDDA----RKLL 417
           A + L QL   Q     A      I       + A +  A+ L  QGK+DDA     KL 
Sbjct: 321 AQLLLGQLLAGQNRHDDAIAAYRGIESHDTLMLAAGLAEAESLRAQGKIDDAVVEFDKLA 380

Query: 418 ANLPA-PDPR-DQALLMRTDAAILFDAKRYPEAETRLQQATAQF----PDDPDLTYDYAM 471
           A+ P+ PDP  ++  L+R D       +R+ EA T    A A+     P    + +   +
Sbjct: 381 AHFPSRPDPLIEKGDLLRQD-------QRFAEAATAYSAAIARMGAPDPRHWAVYFGRGV 433

Query: 472 SAEKTGHYDVMEAQLRKLIQTQPDNPQAYNALGYSLADRNQRLAEADKLVEKASSLAPND 531
           + E+T  + + E   +  ++  PD P   N LGYS  D    + +A +L+E+A +  P D
Sbjct: 434 AYERTDRWPLAEQDFQTALRLNPDQPFVLNYLGYSWLDNGINVDQAKQLIERAVAQRPKD 493

Query: 532 AFIMDSVGWVKYRMGDTSDAIRLLRKAYDMQP-NAEIGAHLGEVLWKTGNQDQARAAFRD 590
            +I+DS+GW  +R+G+ ++A+ +L +A    P +A I  HLG+  W  G + +AR  +  
Sbjct: 494 GYIIDSLGWAHFRLGEYAEAVGILERAIHETPDDATINDHLGDAYWMVGRRLEARYQWER 553

Query: 591 ARKLEPDNDTLVKTLQRL 608
           A  L  D D      ++L
Sbjct: 554 ALSLADDADLSASIQKKL 571



 Score = 48.1 bits (113), Expect = 1e-09
 Identities = 83/355 (23%), Positives = 134/355 (37%), Gaps = 32/355 (9%)

Query: 122 RATEIALAAQSPSDALAAAQLWQQYAPNSERAA----QLDASLLVLSGKPDDASPILARE 177
           RA   AL  +   +   A +L++ Y    ER +    QL     V +G+   A  + A  
Sbjct: 191 RALHGALLQEQLGNKAKAGELYEAYVKGGERPSLRGVQLAGGFFVRTGQAARARALAADY 250

Query: 178 LARVPADNRGSAILALQLLLSRGPNRI--GGLHVLQDL--LKNDMNRPEAQLAIARQQLV 233
             R P            LLL         GG     ++   K+ M    A+L      L+
Sbjct: 251 SQRFPDS----------LLLDNAVAGFAEGGTPPAPEVGTAKDGM----AELYYGTASLL 296

Query: 234 SD-DAPGARKSLEQALALKPDYLPAALTLSQM--GPEERKEGIASLEKYVQQNPKSHDAR 290
           +D D   A      AL L+PD+  A L L Q+  G     + IA+       +     A 
Sbjct: 297 ADNDLQTATMFNRLALHLRPDFPLAQLLLGQLLAGQNRHDDAIAAYRGIESHDTLMLAAG 356

Query: 291 LALAQMYLASDRLDDAQKQFEIMHKNNANELTPLMALALIKIQQKNFNEAQAYLTQYAQQ 350
           LA A+   A  ++DDA  +F+ +  +  +   PL+    +  Q + F EA    T Y+  
Sbjct: 357 LAEAESLRAQGKIDDAVVEFDKLAAHFPSRPDPLIEKGDLLRQDQRFAEA---ATAYSAA 413

Query: 351 AEKTPGADPGQAYIYLAQLSLEQKNE---AAASDWLNKISPSSQQYVPAQITRAQLLAKQ 407
             +    DP    +Y  +    ++ +    A  D+   +  +  Q           L   
Sbjct: 414 IARMGAPDPRHWAVYFGRGVAYERTDRWPLAEQDFQTALRLNPDQPFVLNYLGYSWLDNG 473

Query: 408 GKVDDARKLLANLPAPDPRDQALLMRTDAAILFDAKRYPEAETRLQQATAQFPDD 462
             VD A++L+    A  P+D  ++     A  F    Y EA   L++A  + PDD
Sbjct: 474 INVDQAKQLIERAVAQRPKDGYIIDSLGWA-HFRLGEYAEAVGILERAIHETPDD 527