Pairwise Alignments

Query, 275 a.a., Forms the bulk of type IV secretion complex that spans outer membrane and periplasm (VirB9) from Burkholderia phytofirmans PsJN

Subject, 284 a.a., VirB9 type IV secretion protein from Sinorhizobium meliloti 1021

 Score =  119 bits (299), Expect = 6e-32
 Identities = 85/287 (29%), Positives = 145/287 (50%), Gaps = 23/287 (8%)

Query: 1   MRATALATALAVLCVGSSGAHAYDVP-GWSGDSRVRQVVYRQDEVVRVIAQRGFATHIAL 59
           MR T +AT L  L   +  A A ++P G + DSRVR V Y+   + R+I     +  +  
Sbjct: 1   MRTTFIATLL--LTAAAPTALALEIPRGATQDSRVRFVDYQPYNITRIIGSLRSSVQVEF 58

Query: 60  DPAEHILVVAPGDRDGWQVVANRGDHDVYLKPQLAAHDTNLEIRTDRH-----SYSFDLV 114
            P E I  VA G+   W+V      + ++LKP+     TN+ + T R      SY  +L 
Sbjct: 59  APDEEIAHVALGNSVAWEVAP--AGNILFLKPRENQPVTNISVVTTRRDGSTRSYQMELT 116

Query: 115 VLPLRARFGNDDEMYRITFVYPDVEAAKTKTTDAAALVRERLDQPPRV---------RNS 165
           V   +   G +   Y + + YP  EA + +   AA  +  +  +   V         RN 
Sbjct: 117 VRDGKVEVGQNTYFY-VKYRYPADEAERRRQAAAARAIAAQAKEADNVLAIHEAYGPRNW 175

Query: 166 AYSMQVMPHSEDIAPTAAWDDGRFTYIRIPNNRRIPAIFRVADDDSESVVDRHMEDDVIV 225
            YS Q    ++ + P + +D+G+ T      N+ +PAI+    D SES+V + ++ ++++
Sbjct: 176 RYSAQ---GAQALEPQSVYDNGKVTTFAFVGNQEMPAIYIENSDGSESLVPKSVDGNLVL 232

Query: 226 VHEVARRFVLRLGKEVVGLWNDAFDVDGVPPADGTTVSGVKRVLRSD 272
           VH ++R+F+LR G +V+ ++N+A+D  G+ P   TT   V+R++R D
Sbjct: 233 VHAISRKFILRRGGDVLCVFNEAYDRVGINPDTSTTSPSVERIVRID 279