Pairwise Alignments

Query, 275 a.a., Forms the bulk of type IV secretion complex that spans outer membrane and periplasm (VirB9) from Burkholderia phytofirmans PsJN

Subject, 231 a.a., putative type IV secretion system protein VirB9 from Phaeobacter inhibens DSM 17395

 Score = 86.7 bits (213), Expect = 4e-22
 Identities = 73/242 (30%), Positives = 104/242 (42%), Gaps = 23/242 (9%)

Query: 1   MRATALATALAVLCVGSSGAHAYDVPGWSGDSRVRQVVYRQDEVVRVIAQRGFATHIALD 60
           MR   L   + +   G++ A      G   D+RVR   Y+  +V R+       T I   
Sbjct: 1   MRRLFLTLVVLIPLAGTAYAETQPRQG-PYDARVRLATYQDGQVYRIRTSLTHVTSIEFG 59

Query: 61  PAEHILVVAPGDRDGWQVVANRGDHDVYLKPQLAAHDTNLEIRTDRHSYSFDLVVLPLRA 120
             E I  +  GD +G+ +    G     +KP      TN+ + T+R SY F++       
Sbjct: 60  QGETIRSIIAGDTEGFLLDGVPGGQAFAIKPVTRGAHTNITVYTNRRSYYFNVTE----- 114

Query: 121 RFGNDDEMYRITFVYPDVEAAKTKTTDAAALVRERLDQPPRVRNSAYSMQVMPHSEDIAP 180
              +    Y I F Y   EAA  ++  AA+       QP    N AY +       +I P
Sbjct: 115 --ASSPTFYVIRFTYS--EAAPQQSRVAAS-------QPV---NHAYGVS---ERSEITP 157

Query: 181 TAAWDDGRFTYIRIPNNRRIPAIFRVADDDSESVVDRHMEDDVIVVHEVARRFVLRLGKE 240
              WDDG FTY R   N  +PAIFR +  +  SV      D VI V  V+ R+VLRLG+ 
Sbjct: 158 REIWDDGTFTYFRFAENAPLPAIFRWSGGNERSVNALARPDGVIRVSGVSDRWVLRLGEN 217

Query: 241 VV 242
            +
Sbjct: 218 EI 219