Pairwise Alignments

Query, 460 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

Subject, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  560 bits (1443), Expect = e-164
 Identities = 290/471 (61%), Positives = 350/471 (74%), Gaps = 23/471 (4%)

Query: 4   IDNNLKPLPSAVSVLIVDDEPGMRSFLNKALSKKFALVETAGSIEDAEQLRSRCHFDLLI 63
           +D N   L  A SVL+VDDE GM+  L KALSK F+ V+ A SIE+AE LR   H+DLLI
Sbjct: 5   LDLNQTHLYQAFSVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLI 64

Query: 64  VDIRLPGRSGIEWHEALDEQGRRSDVIFMTGYADLEVAIKALRAGASDFIMKPFHLEQMM 123
           +DI LPGRSGIEW EA  +   R+DVIFMTG+ADLE AI AL+ GASDFI+KPF+LEQM+
Sbjct: 65  LDINLPGRSGIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQML 124

Query: 124 SAVDRCIERRLLRRENLMLRREVSIGYSSTIIGSSEAMKSVKQVIERVAPTNAVVLIQGE 183
            AV RC+ +RL  R    L+R+     ++ IIGSS   + +KQ I + AP+ A VLI+GE
Sbjct: 125 QAVQRCMNKRLNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGE 184

Query: 184 SGTGKELVARQLHLLSGRQGPFVPVNCGSIAPELLESELFGHTAGAFTGAKGNREGLFSF 243
           SGTGKELVAR +H  SGRQGPFVP+NCG+IAPELLESELFGHT+GAFTGAK +REGLF  
Sbjct: 185 SGTGKELVARGIHEASGRQGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRV 244

Query: 244 ASGGTIFLDEIGEMPLKMQTALLRVLEQKAIRPVGSEKEVNIDVRVIAATNRTLVDEVEA 303
           A+GGT+FLDEIGEMPL MQ +LLRVLEQ+A+RPVGSEKEVN+DVRV+AATNR L  EVE 
Sbjct: 245 ANGGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVEN 304

Query: 304 GNFRRDLYYRLNVLDILIPPLRERPEDVVELTHHFTRQLAAELGVREVVWSHEDMVKLQQ 363
           G FR DLYYRLNVL I + PLRER +D+ EL   FT+ L AELG+    W++ED+  +Q 
Sbjct: 305 GRFRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQD 364

Query: 364 HEWPGNIRELRNMIERCILLGKPPAEYWKQ------QVKTESSASQ-------------- 403
           ++WPGNIREL+N+IERC+LLGKPPA YW++        + E + SQ              
Sbjct: 365 YDWPGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQ 424

Query: 404 ---GYPLDWPLKEVEKHHVTSVVDLHSGNKSAAARDLGVSRKTLDRKYKEW 451
              GYP DWPL  VEK H+  +V LH GNKSAAARDLGV+RKTL+RKYKEW
Sbjct: 425 PSLGYPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475