Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 914 a.a., Signal transduction histidine kinase from Pseudomonas stutzeri RCH2

 Score =  265 bits (676), Expect = 2e-74
 Identities = 178/517 (34%), Positives = 274/517 (52%), Gaps = 17/517 (3%)

Query: 887  RNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAAK 946
            R A + A + N AKS FLA MSHEIRTP+N VLGMLQL++ T L   QQ Y+    ++  
Sbjct: 396  REAAERAASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPLDRSQQFYLDTISSSGN 455

Query: 947  SLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALP 1006
            SL+ ++NDILD+++I +GKL L+     +E+L+ +   + +A      + +   L+  +P
Sbjct: 456  SLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQSLEKQLSLHVGLEPGVP 515

Query: 1007 AWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGISEE 1066
              +  D  RL+QIL+NL  NALKFT HG V++ + C +       + F + DSGIG+ +E
Sbjct: 516  RRIRGDPTRLKQILMNLLSNALKFTEHGHVLLEVSCRQTPDGGPRLVFCVSDSGIGMRQE 575

Query: 1067 QIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTF- 1125
             + ++F  F Q +SST+RR+GG+GLGLAISK LVE+M G ++V S  G GSRF F++   
Sbjct: 576  VLAQLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSAPGRGSRFCFEIPLR 635

Query: 1126 PVMEVEANPRADLSGYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQATA 1185
               +VE      L+G   L+   +    E LS +L  +G   E      +  + +   T 
Sbjct: 636  TATDVEDPLTQLLAGRPALLASQDAQGLEALSHLLRRWGMRTERCLTPDRLPDYLADFT- 694

Query: 1186 NAQQFDVVLMDWRMPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHEVIAESQHINNVPF 1245
             A    V+L  W       L+       A        ++ML +  HE    +  +  +  
Sbjct: 695  -APPLLVLLAPWPGSPSQWLERLRPYLEA-----NQRMLMLYSPIHEPPPLTPDLRLIS- 747

Query: 1246 VNFLTKPVTSQILAEAVLNAIEGKTMDA--NPKPRSQRLLAGLTLLVVEDNQLNREVIDE 1303
               L  P+ S  L EA+    E +   +    K     L +   +LV EDN +N+ V+  
Sbjct: 748  ---LALPLQSAPLREALQALYEREPAQSAETDKASIAPLQSEPCILVAEDNPVNQMVVRG 804

Query: 1304 LLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEATRRIR---ADGRFD 1360
            LL   G  V LA+ G + V       D    ++MD +MP++DG EA+R+IR   AD +  
Sbjct: 805  LLKKRGYAVQLADNGRQAVDLYRRDPDAVQLILMDCEMPELDGFEASRQIRKLEADQQLQ 864

Query: 1361 QLPILAMTANASQADKQECLEAGMNAHVSKPIDMQQL 1397
             +PI+A+TA+     +Q  LE+GM+  + KP++ +QL
Sbjct: 865  AVPIIAVTAHVLAEHRQRGLESGMDEFIGKPLESRQL 901