Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

 Score =  265 bits (676), Expect = 2e-74
 Identities = 169/516 (32%), Positives = 281/516 (54%), Gaps = 23/516 (4%)

Query: 889  AKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAAKSL 948
            AK+ A  A   KS FLANMSHE+RTP+N V+G  + M  T L+  Q  Y+   + +A +L
Sbjct: 280  AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNL 339

Query: 949  LGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAW 1008
            L ++NDILDFSK++AGKL L+  P   + ++ ++  + + +     +E+   +D  +P  
Sbjct: 340  LTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRG 399

Query: 1009 LLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGISEEQI 1068
            ++ D LR+QQ+L NL GN++KFT  G + V +E      + + +QF + D+GIGISE Q 
Sbjct: 400  VVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQ 459

Query: 1069 ERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFPVM 1128
             ++F  F QA++S SRR+GGTGLGL I+++LV  MGG++ +TS++  GS FWF L     
Sbjct: 460  AQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTT 519

Query: 1129 EVEANP--RADLSGYR-ILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQATA 1185
            E+  N    AD   +R +L+++ N     I+ + L   G  V   S    AI + +    
Sbjct: 520  ELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVTYRS----AIPEEQHV-- 573

Query: 1186 NAQQFDVVLMDWRMPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHEVIAESQHINNVPF 1245
                +D VL++            E+           ++V + +   E+    Q +   P 
Sbjct: 574  ----YDYVLLNLAPSKETNPTLVELWVQRALAMTHNVIVGVPS--TELALADQLMQRYP- 626

Query: 1246 VNFLTKPVTSQILAEAVLNAIEGKTMDANPKPRSQRLLAGLTLLVVEDNQLNREVIDELL 1305
            V  ++KP++ + L + +          + PKP++ +L   L ++ V+DN  N ++I  LL
Sbjct: 627  VKCISKPLSRKKLLQTLAAQQPQLANTSLPKPQADKL--PLCVMAVDDNPANLKLITALL 684

Query: 1306 TYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEATRRIRADGRFDQLPIL 1365
                  VV    G E + Q       FD ++MD+QMP +DG+ A + I+    +   P++
Sbjct: 685  QERVEYVVSCTSGQEAIEQA--QSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVI 742

Query: 1366 AMTANASQADKQECLEAGMNAHVSKPID---MQQLL 1398
            A+TA+A   ++   L+AGM+ +++KPI+   +QQ+L
Sbjct: 743  AVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVL 778



 Score = 63.2 bits (152), Expect = 1e-13
 Identities = 38/131 (29%), Positives = 71/131 (54%), Gaps = 8/131 (6%)

Query: 1134 PRADLSGYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQATANAQQFDVV 1193
            P+AD     ++ VDDN    ++++ +L +    V + + G +AIE+     A ++QFD++
Sbjct: 658  PQADKLPLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQ-----AQSRQFDII 712

Query: 1194 LMDWRMPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHEVIAESQHINNVPFVNFLTKPV 1253
            LMD +MP +DG+   + +K       TP V+ +TA  H +  E   +      ++LTKP+
Sbjct: 713  LMDIQMPHMDGVTACKAIKQLKGYRDTP-VIAVTA--HAMAGERDRLLKAGMDDYLTKPI 769

Query: 1254 TSQILAEAVLN 1264
               IL + +++
Sbjct: 770  EEHILQQVLVH 780