Pairwise Alignments
Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3
Subject, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B
Score = 446 bits (1146), Expect = e-128
Identities = 363/1273 (28%), Positives = 620/1273 (48%), Gaps = 101/1273 (7%)
Query: 350 SMLEHSLDGIISYDLAGNITSWNQGAERLFGFTEPETLGLPSSELIVPPSIVLEEQA--- 406
++LE + + ++ D +G + N + LFG++ E L L + + ++P + Q
Sbjct: 516 AVLEAAPEAMLIVDESGQLVFSNSRCQELFGYSGEEMLNL-NIDALIPENERHGHQGKRQ 574
Query: 407 LFAEVLAGKTVLNRVSRHQRADGSN---LSTSTTALPIYDEHGDIVGLSQTIRDITAQQD 463
LF E K + N H G + + LP D G ++ +IRD+T Q
Sbjct: 575 LFIEGGRDKVMANGKPLHALKCGGEQFPVQIGLSLLPA-DSRGQRQ-VAASIRDLTEQLA 632
Query: 464 AERHILNLNASLERQVAKRTHALQQALLENQALLDTINQQLHYSVTDLDGVILDVNEHFC 523
ER I + V+ A+ + + ++ ++ ++T+L G HF
Sbjct: 633 VERQIRESESRFRGLVSNIPGAVYRTRINGTWTMEYVSD----NITELTGYPA---WHFI 685
Query: 524 LISGYAREELVGKTHAVLKSGEHDAAFWKAMWEQIKAGKSWHGEICNRGKDQQLKWFDTV 583
+++ G + DA A+ EQ ++ E R +D L+W
Sbjct: 686 ----ESKKRSFGSLILDEDAERCDAIISGALAEQ----HAFEVEYRIRHRDGSLRWVHEK 737
Query: 584 IGSVFDEHGQVERFVALQTDITERKLAQ--IEKNR--IATLLTNVLDAASEMTIIAADPQ 639
+ +DE G F DITE KLAQ IE++R + T+ +V ++ + ++
Sbjct: 738 GKASYDEDGNPVWFDGSLNDITESKLAQERIEQSREQLETITESVPSTVYQL-VWRSERD 796
Query: 640 GIITIFNRGAERMLWYSAEEIIGKTTPAPFHIADEIAARAAELSVEYGQKIQGFDTFVHK 699
T + A L + E++ I +E + G+ IQ +
Sbjct: 797 RRFTFLSSAAMATLGFHRNEVLDNFELVAERIVEE----------DRGEIIQ-----MLA 841
Query: 700 AREEGSETRTWTYVRKDGSQLPISLSVTAMRGNDGEIL-GYLGIGVDISQIVAQQEALLT 758
R T+ + Y G + + D + GYL +DIS + L
Sbjct: 842 GRHGMQWTKAFRYHFPSGELRWLEAGARGSKQQDALVWNGYL---MDISGRKRMETELAQ 898
Query: 759 ASNHLSKAAEVAKLGIWTWNLLDNSLQWNDRMFAMYDQPESLKQQGLSYEHWRMR----- 813
+ H + A +GI + +DR + + G+S + + +
Sbjct: 899 SEAHFRALFDNAGIGI---------VNLDDRGIIKDCNGQFVSDLGISSDSLKRKQLADL 949
Query: 814 VHPDDVIEAEETLKRAVEHDE-PYEPIFRILTTDGEVRYVQAAAKIERDRQGHVIRVIGI 872
+HP+D A + E ++ +R+L DGE+ ++ A + + G V+
Sbjct: 950 MHPEDRALATGLYQALAESEQGSISGEWRMLDGDGELMWMAVIASVLEEGDGGERSVVMS 1009
Query: 873 NIDITAQRQLEKTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSV 932
+IT + L L AK++AD AN AKS FLANMSHEIRTPMNA++GM QL T L
Sbjct: 1010 IANITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDR 1069
Query: 933 QQQGYVTKAQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGN 992
+Q+ YV K + A+KSLLG++NDILDFSKI+AGKL +++ P ++ ++ DL + S +
Sbjct: 1070 KQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVKAAD 1129
Query: 993 SDVEVMFDLDSALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTV 1052
+E++F + +P L D LRL Q+LINL NA+KFT G+V++ + L + + V +
Sbjct: 1130 KQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELARDEDQVQL 1189
Query: 1053 QFSIVDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSK 1112
+F++ DSGIG++ EQ ++F F QA++ST+R++GGTGLGLAI K+LVELMGG++ V S+
Sbjct: 1190 KFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEIGVDSQ 1249
Query: 1113 VGVGSRFWFDLTFPVME-VEANPRADLSGYRILVVDDNQITTEILSKILSDYGCVVETAS 1171
G GS F+F ++ V + + N +L G +LVVDDN +IL L G V++A
Sbjct: 1250 FGNGSTFYFTVSVKVAQNAQLNVEQELEGMAVLVVDDNSTARDILRTTLQSMGFSVDSAR 1309
Query: 1172 GGYQAIEKVKQATANAQQFDVVLMDWRMPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGH 1231
G +A+EK + + + + L+DW+MP++DG +TA ++ PL++M++A+ +
Sbjct: 1310 SGMEALEKCAE-----RDYRIALIDWKMPEMDGTETAARMREL---KQPPLILMVSAHAN 1361
Query: 1232 EVIAESQHINNVPFVNFLTKPVTSQILAEAVLNAI--EG-KTMDANPKPRSQRLLAGL-- 1286
+ + + ++TKP+++ L + +++A+ +G K + +P + L+GL
Sbjct: 1362 SEFIDK--VEEMGINGYITKPISASRLLDGIMSALGRQGHKPVRRKAQPMDAQKLSGLKG 1419
Query: 1287 -TLLVVEDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDID 1345
+L+VEDN++N+EV E L G + +A+ G + ++ FD V+MD QMP +D
Sbjct: 1420 KRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKL--GQQSFDLVLMDCQMPVMD 1477
Query: 1346 GLEATRRIRADGRFDQLPILAMTANASQADKQECLEAGMNAHVSKPID--------MQQL 1397
G +ATR +R +LP++AMTANA DK+ CL AGMN H++KPI+ +Q L
Sbjct: 1478 GYQATRELRKLPGLAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTLLQYL 1537
Query: 1398 LPNILRLVGRDAAQFAEPESMHLDAQHNLEGETLLDDIRLILRRFGGNQVFFEKMASSFA 1457
P L DA A+ E L + E E L DI L+ ++ + ++ F
Sbjct: 1538 CPEAKGLESADADAAADQEVTSLTSWP--EHEDL--DIDRGLQLVQNSERLYRRILERFV 1593
Query: 1458 PEMIKQLSLFKQSTKTFDYATTAAISHAIKGIASNFGARRLAVHAAFLEKQFKQEGLELL 1517
+ +++ ++H +KG+A N A L A LE + Q
Sbjct: 1594 TSQAQAGKKIRKALALGQQEDAVRLAHTLKGVAGNLSADTLVEEARQLEAKLAQGEACEA 1653
Query: 1518 EIKRWTDTLESLINQSIEQLSGFLPKTQLKQSQSSESANGVVDIQSVRAELDNLASLLQE 1577
E++ L +++ +IE+ T+ + Q ES + +++ L+ L + L++
Sbjct: 1654 ELEAVETRLVTIV-AAIERW-----MTEGVEEQGVESGE-PLSADALKEVLNTLVTQLED 1706
Query: 1578 NNLEAVTLVDKLA 1590
+ +AV+ ++ L+
Sbjct: 1707 ADADAVSTLESLS 1719
Score = 53.5 bits (127), Expect = 2e-10
Identities = 85/455 (18%), Positives = 173/455 (38%), Gaps = 42/455 (9%)
Query: 455 IRDITAQQDAERHILNLNASLERQVAKRTHALQQALLENQA-----LLDTINQQLHYSVT 509
I+ + + R I L+ ++A+ +QALL+++ L+D ++ + Y
Sbjct: 351 IKRLQKPEGVVREIATLSHKFN-EMAEVLEEREQALLDSRGNRFATLIDGMSDKSFYCSM 409
Query: 510 DLDGVILDVNEHFCLISGYAREELVGKTHAVLKSGEHDAAFWKAMWEQIKAGKSWHGEIC 569
DG I V+ + G + E L K + S + W+ M ++ ++
Sbjct: 410 TPDGNIDQVSAGVEKVLGISPEVLKRKYQRLFSSNAINEQNWQFMEMALRGEAVPPHQVE 469
Query: 570 NRGKDQQLKWFDTVIGSVFDEHGQVERFVALQTDITERKLAQIEKNRIATLLTNVLDAAS 629
G D L+ D + + D+ GQ+ L D+TE+ A N VL+AA
Sbjct: 470 MAGADGSLRRLDLFMQPLLDDEGQLISVEMLFNDVTEQFSAAAWSNA-------VLEAAP 522
Query: 630 EMTIIAADPQGIITIFNRGAERMLWYSAEEIIGKTTPAPFHIADEIAARA-AELSVEYGQ 688
E +I D G + N + + YS EE++ A + + +L +E G+
Sbjct: 523 EAMLI-VDESGQLVFSNSRCQELFGYSGEEMLNLNIDALIPENERHGHQGKRQLFIEGGR 581
Query: 689 KIQGFDTFVHKAREEGSETRTWTYVRKDGSQLPISLSVTAMRGND-GEILGYLGIGVDIS 747
K G ++ G Q P+ + ++ + + G+ I
Sbjct: 582 ---------DKVMANGKPLHA---LKCGGEQFPVQIGLSLLPADSRGQRQVAASIRDLTE 629
Query: 748 QIVAQQEALLTASNHLSKAAEVAKL-------GIWTWNLLDNSLQWNDRMFAMYDQPESL 800
Q+ +++ + S + + G WT + +++ + + ES
Sbjct: 630 QLAVERQIRESESRFRGLVSNIPGAVYRTRINGTWTMEYVSDNIT-ELTGYPAWHFIESK 688
Query: 801 KQQGLSYEHWRMRVHPDDVIEAEETLKRAVEHDEPYEPIFRILTTDGEVRYVQAAAKIER 860
K+ + + +D + + A+ +E +RI DG +R+V K
Sbjct: 689 KRS------FGSLILDEDAERCDAIISGALAEQHAFEVEYRIRHRDGSLRWVHEKGKASY 742
Query: 861 DRQGHVIRVIGINIDITAQRQLEKTLRNAKQEADT 895
D G+ + G DIT + ++ + ++++ +T
Sbjct: 743 DEDGNPVWFDGSLNDITESKLAQERIEQSREQLET 777
Score = 35.8 bits (81), Expect = 4e-05
Identities = 122/586 (20%), Positives = 214/586 (36%), Gaps = 96/586 (16%)
Query: 336 QRKQQVLAEQARRASMLEHSLDGI------ISYDLAGNITSWNQGAERLFGFTEPETLGL 389
+R+Q +L + R + L +DG+ S GNI + G E++ G + PE L
Sbjct: 380 EREQALLDSRGNRFATL---IDGMSDKSFYCSMTPDGNIDQVSAGVEKVLGIS-PEVLKR 435
Query: 390 PSSELIVPPSIVLEEQALFAEVLAGKTVLNRVSRHQRADGSNLSTSTTALPIYDEHGDIV 449
L +I + L G+ V ADGS P+ D+ G ++
Sbjct: 436 KYQRLFSSNAINEQNWQFMEMALRGEAVPPHQVEMAGADGSLRRLDLFMQPLLDDEGQLI 495
Query: 450 GLSQTIRDITAQQDAERHILNLNASLERQVAKRTHALQQALLENQALLDTINQQLHYSVT 509
+ D+T Q A NA LE A +A+L +
Sbjct: 496 SVEMLFNDVTEQFSAAAW---SNAVLE--------AAPEAML----------------IV 528
Query: 510 DLDGVILDVNEHFCLISGYAREELVG-KTHAVLKSGEHDA------AFWKAMWEQIKA-G 561
D G ++ N + GY+ EE++ A++ E F + +++ A G
Sbjct: 529 DESGQLVFSNSRCQELFGYSGEEMLNLNIDALIPENERHGHQGKRQLFIEGGRDKVMANG 588
Query: 562 KSWHGEICNRGKDQQLKWFDTVIG-SVFDEHGQVERFVALQ-TDITERKLAQIE----KN 615
K H C G +Q F IG S+ + +R VA D+TE+ + + ++
Sbjct: 589 KPLHALKC--GGEQ----FPVQIGLSLLPADSRGQRQVAASIRDLTEQLAVERQIRESES 642
Query: 616 RIATLLTNVLDAASEMTIIAADPQGIITIFNRGAERMLWYSAEEIIGKTTPAPFHIADEI 675
R L++N+ A I G T + Y ++ I T +H +
Sbjct: 643 RFRGLVSNIPGAVYRTRI-----NGTWT---------MEYVSDNITELTGYPAWHFIESK 688
Query: 676 AARAAELSVEYGQKIQGFDTFVHKAREEGSETRTWTYVR-KDGSQLPISLSVTAMRGNDG 734
L ++ + + D + A E +R +DGS + A DG
Sbjct: 689 KRSFGSLILD--EDAERCDAIISGALAEQHAFEVEYRIRHRDGSLRWVHEKGKASYDEDG 746
Query: 735 EILGYLGIGVDISQIVAQQEALLTASNHLSKAAEVAKLGIWTWNLLDNSLQW---NDRMF 791
+ + G DI++ QE + + L E ++ L W DR F
Sbjct: 747 NPVWFDGSLNDITESKLAQERIEQSREQLETITESVPSTVY-------QLVWRSERDRRF 799
Query: 792 AMYDQPESLKQQGL-------SYEHWRMRVHPDDVIEAEETLKRAVEHDEPYEPIFRILT 844
++ G ++E R+ +D E + L A H + FR
Sbjct: 800 TFLSS-AAMATLGFHRNEVLDNFELVAERIVEEDRGEIIQML--AGRHGMQWTKAFRYHF 856
Query: 845 TDGEVRYVQAAAKIERDRQGHVIRVIGINIDITAQRQLEKTLRNAK 890
GE+R+++A A+ + + V G +DI+ ++++E L ++
Sbjct: 857 PSGELRWLEAGARGSKQQDALVWN--GYLMDISGRKRMETELAQSE 900