Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 941 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella amazonensis SB2B

 Score =  278 bits (712), Expect = 2e-78
 Identities = 214/675 (31%), Positives = 338/675 (50%), Gaps = 52/675 (7%)

Query: 886  LRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAA 945
            L  AK++A  A+  KS FLANMSHE+RTP+N V+G  + +  T L   Q  Y+   + +A
Sbjct: 298  LDRAKKDAQEASRIKSEFLANMSHELRTPLNGVIGFARQLLKTPLHSSQMEYIKTIERSA 357

Query: 946  KSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSAL 1005
             SLL ++NDILDFSK++A K+ L+  P  +   + D   +L+ +     +E + D+D+ +
Sbjct: 358  TSLLQIINDILDFSKLEANKMVLETMPFGLRASLEDTINLLAGSAHAKGLEFVVDVDANV 417

Query: 1006 PAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGISE 1065
            P  L  D +RL Q++ NL GNA+KFT  G V + +     E  ++T++  + D+GIGI  
Sbjct: 418  PENLSGDVMRLGQVMTNLLGNAIKFTEEGSVHLKISLASLEDNNLTLRCEVTDTGIGIDP 477

Query: 1066 EQIERIFTGFEQAESSTSRRFGGTGLGLAISKRL-VELMGGQLQVTSKVGVGSRFWFDL- 1123
            EQ E +F  F QA+SS SRR+GGTGLGL I+KRL V++MGG++   S+VG GS FWF + 
Sbjct: 478  EQQELLFQAFGQADSSISRRYGGTGLGLVITKRLVVQMMGGRIGFHSEVGKGSSFWFTVP 537

Query: 1124 ----TFPVMEVEANPRADLSGYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEK 1179
                 FPV   +  P   L G+ +L+ +  ++T E +++ L D+  +V  AS      E 
Sbjct: 538  LQLSPFPVH--DTLPLEKLIGHSVLLFEPRKLTRESIARKLKDWHMMVTLASN-----ED 590

Query: 1180 VKQATANAQQFDVVLMDWR-MPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHEVIAESQ 1238
              +   + + +D +L+  +     + LQ         TGS   L+++      EV  +  
Sbjct: 591  ELERHLDDRHYDAILLSGQSCESCEDLQRHLSRVKDHTGS---LLLLNDCLDPEVYTQEM 647

Query: 1239 HINNVPFVNF-LTKPVTSQILAEAVL------NAIEGKTMDANPKPRSQRLLAGLTLLVV 1291
                 PFV+  L  PV+   LA+ ++      NA     +   P  R       L +L V
Sbjct: 648  E----PFVDLVLQLPVSELKLAQNLIFPPVKKNAAPKPALATKPSARHP-----LNVLAV 698

Query: 1292 EDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEATR 1351
            +DN  N ++ID LL    A VV    G + V   L     FD + MD+QMP  DG+ ATR
Sbjct: 699  DDNLANLKLIDTLLKELVANVVAVSSGDQAV--ALAKSRSFDLIFMDIQMPGTDGVTATR 756

Query: 1352 RIRADGRFDQLPILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLPNILRLVGRDAAQ 1411
             IR D      PI+A+TA+A   +++    +GM+ ++ KPID   L   I R + R    
Sbjct: 757  LIRQDSLNRNTPIIAVTAHAINEERERIQASGMDGYLPKPIDEAALKGVISRWLTRPKFT 816

Query: 1412 FAEPESMHLD---AQHNLEGETLLDDIRLILRRFGGNQVFFE-KMASSFAPEMIKQLSLF 1467
              +  +++ +   +Q N + +  +D ++++L    G     E  MA S    M+  +   
Sbjct: 817  HFDSNTLNWELCLSQANQKEDLAIDMLKMMLESLPGTVNDIELAMARSDNESMLYTVHKL 876

Query: 1468 KQSTKTFDYATTAAISHAIKGIASNFGARRLAVHAAFLEKQFKQEGLELLEIKRWTDTLE 1527
              ++      TT  +   I+       A +     A +E        E+LE+      +E
Sbjct: 877  HGASCYCGVPTTQKLCQQIE------SALKGGADVADVEP-------EILELLDELTKVE 923

Query: 1528 SLINQSIEQLSGFLP 1542
            S   Q I Q+S  +P
Sbjct: 924  SAATQVISQMSAEVP 938