Pairwise Alignments
Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3
Subject, 1287 a.a., signal transduction histidine kinase-like protein (RefSeq) from Shewanella amazonensis SB2B
Score = 404 bits (1037), Expect = e-116
Identities = 259/761 (34%), Positives = 415/761 (54%), Gaps = 42/761 (5%)
Query: 866 VIRVIGINIDITAQRQLEKTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLM 925
++ +GI D+T Q + E+ L +A+++A A+ AKS FLANMSHEIRTPMNAVLG+LQ+
Sbjct: 503 IMGYLGIAYDLTEQLKREQELADAREQALQASRAKSDFLANMSHEIRTPMNAVLGLLQMT 562
Query: 926 QYTALSVQQQGYVTKAQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVV 985
T L + + Y+ K Q AAKSLL LLNDILDFSKI+AG+++L+ S++ L+ D+ +
Sbjct: 563 LQTELPPRPRDYLEKTQQAAKSLLALLNDILDFSKIEAGRIELERQGFSLQQLLGDMGSI 622
Query: 986 LSANHGNSDVEVMFDLDSALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRH 1045
LS+ D+E+++ + ++P L+ D LRL+QIL+N+ NA+KFT G +I ++
Sbjct: 623 LSSQVQQKDIELVYQVAPSVPDQLIGDSLRLRQILLNVLTNAIKFTEKGDIITRIDADLG 682
Query: 1046 EAESVTVQFSIVDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGG 1105
+ + + I DSGIG++ EQ IF GF QA+SS SRR+GGTGLGLAI++ LV LM G
Sbjct: 683 DDGTCHLHIEIQDSGIGMTNEQQAIIFKGFSQADSSISRRYGGTGLGLAITRELVHLMQG 742
Query: 1106 QLQVTSKVGVGSRFWFDLTFPVMEVEANPRADLSGYRILVVDDNQITTEILSKILSDYGC 1165
+++VTS GVGS F D+ + P A SG R+L+V+DN + + S++L D GC
Sbjct: 743 EIRVTSSPGVGSTFTIDVQLGFDATKYRPGARFSGVRVLLVEDNHTSRLVFSELLRDLGC 802
Query: 1166 VVETASGGYQAIEKVKQATANAQQFDVVLMDWRMPDIDGLQTAEMLKNAGTGSYTPLVVM 1225
V + G A++ +++ ++ FDV+L DW++P +DGL+ A +++ + S P +++
Sbjct: 803 EVTALNNGLTAMKTIERMAPDS--FDVLLADWQLPGLDGLELASWIRHLDSLSRQPGIII 860
Query: 1226 LTAYGHEVIAESQHINNVPFVNFLTKPVTSQILAEAVLNAIEGKTMDANPKPRSQRL--- 1282
+TA+ ++ F L KPVT ++++ + + +E D L
Sbjct: 861 VTAFSQAMLEAQLKHREEEFDATLIKPVTREMVSRCLQSVLERHNNDGLDMLSHLPLAPS 920
Query: 1283 LAGLTLLVVEDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMP 1342
L G LL+VEDN NR V LL GA V+ A G + + L S FD V+MD+QMP
Sbjct: 921 LVGRRLLLVEDNATNRLVATSLLGQLGAEVIEAVDGFQALK--LLSRQQFDLVLMDIQMP 978
Query: 1343 DIDGLEATRRIRADGRFDQLPILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLPNIL 1402
+DG + TR+IR + LPI+AMTANA DKQ C +AGMN H+SKP ++ ++ +L
Sbjct: 979 GMDGYQTTRKIRNELMLTDLPIIAMTANAMPEDKQACRDAGMNCHISKPFEIDEVATKLL 1038
Query: 1403 RLVG------RDAAQFAEPESMH-----------LDAQHNLEGETLLDDIRLILRRFG-- 1443
+ + R + AE ES + HN + + L +R + G
Sbjct: 1039 QYLSPPEHPMRSSEALAEDESTSAGSLTAAPEAAVTEMHNPK-DALPQSVRQFSQANGLD 1097
Query: 1444 --------GNQVFFEKMASSFAPEMIKQLSLFKQSTKTFDYATTAAISHAIKGIASNFGA 1495
G++ F ++ F ++ + S H++K A++ G
Sbjct: 1098 LEEACNRLGDRELFTRVIDQFLLDISQAQRCL--SVPEIAMKDARIQYHSLKSGAASCGF 1155
Query: 1496 RRLAVHAAFLEKQFKQEGLELLEIKRWTD-TLESLINQSIEQLSGFLPKTQLKQSQSSES 1554
LA+ E + E E++ D + + ++I QL P + + +
Sbjct: 1156 TALALVLRNAEANCRPEA----ELRVAPDEAVLRALPEAISQLEQLQPLLSPQVQSGAAA 1211
Query: 1555 ANGVVDIQSVRAELDNLASLLQENNLEAVTLVDKLAKPLSQ 1595
+ ++ + A+L L LL ++++ A+ L+ L +PL++
Sbjct: 1212 SQNLLPQAELSAQLITLQQLLSQSDMAALDLLANLREPLAE 1252
Score = 260 bits (664), Expect = 8e-73
Identities = 185/552 (33%), Positives = 277/552 (50%), Gaps = 69/552 (12%)
Query: 15 LFVLLVGLFFSAVLAWQVSRINAQTISQALEERAQQISENVTNRITLYQYGLRGARGMIL 74
+ +L++G + LA Q N + + ++ER +QI+ VT +++LYQYGLRG RG +L
Sbjct: 23 ILILVLGYVVGSQLAEQQKLENRYRVQEVMQERLEQITTGVTEKVSLYQYGLRGVRGAML 82
Query: 75 TAGEDHISRSMFQNYSLTRDVDEEFPGARGFGFIRRVPKENEAQFLARVKSMDWPD--FH 132
T G D+ S Q Y+ +RD EFPGARGFGFI+ VP FL +M+ PD F
Sbjct: 83 TYGVDNFDYSRMQLYTQSRDYSHEFPGARGFGFIQYVPVSALDTFLDS-SAMERPDGRFA 141
Query: 133 IRQLNPNEGEKYLIEYIEPLDRNKAAVGLDIASESHRKEAADRALLSGAVQISAPITLVQ 192
+RQLNP++ + ++I +IEP RNK AVGLDI SES+R++AA R+ +V ++ PITLVQ
Sbjct: 142 LRQLNPHDDDLFVIRFIEPEARNKQAVGLDIGSESNRRQAALRSARENSVTLTGPITLVQ 201
Query: 193 ATGKPLQSFLILLPVYRSGTVPKTPEERLAQGFGWSYAPLVTTEILTGLSLHQKMTKLML 252
A+ K LQ FLIL+PVYR+ + +A GWSYAP++ E+L +S ++ L +
Sbjct: 202 ASQKSLQGFLILMPVYRTPDSETSSTTGMANLVGWSYAPILIDEVLNTISGLEEHLVLTI 261
Query: 253 SDVTDEQQPINFFETHANDLSELSDYSYKSTKTIFGRHWQFEVIAYPAFIKSLHLNKPSL 312
DVTD FF+ A+D++ L+ + + +FGR W+ + PAFI+ + L +PS
Sbjct: 262 YDVTDGSAQ-QFFQRGAHDVA-LTQHQVDADIGLFGRDWRLSLSPDPAFIQRMALPEPSS 319
Query: 313 VLFSGCLFSLLLAALIAMWSLSLQRKQQVLAEQARRASMLEHSL---------------- 356
L L SLL+A L+ L R+ VL + AS E +L
Sbjct: 320 TLLDAWLISLLIAVLVYSGQLMWMRRAVVLQHRRELASAEEKALLSAKAKLEQLVHERTS 379
Query: 357 -----------------DGIISYDLAGNITSWNQGAERLFGFTEPETLGLPS------SE 393
II+ D G IT +N AERL GFT E +GL + E
Sbjct: 380 QLEKMGVLQRTILDAASYAIIATDTEGIITVFNPSAERLLGFTAKEMVGLQTPAIFHLEE 439
Query: 394 LIVPPSIVLEEQ----------ALFAEVLAGKTVLNRVSRHQRADGSNLSTSTTALPIYD 443
+V + L E+ A A+ GK N + + G+ ++ + +Y
Sbjct: 440 EVVRRATQLSEELGTKIEPGFDAFVAKSRRGKEDTNNWT-YVSKSGARITVKLSVTTLYG 498
Query: 444 EHGDIVGLSQTIRDITAQQDAERHILNLNASLERQVAKRTHALQQALLENQALLDTINQQ 503
E DI+G D+T Q E+ + + A +QAL ++A D +
Sbjct: 499 EDKDIMGYLGIAYDLTEQLKREQELAD--------------AREQALQASRAKSDFLANM 544
Query: 504 LHYSVTDLDGVI 515
H T ++ V+
Sbjct: 545 SHEIRTPMNAVL 556
Score = 134 bits (338), Expect = 5e-35
Identities = 70/165 (42%), Positives = 107/165 (64%), Gaps = 4/165 (2%)
Query: 604 ITERKLAQIEKNRIATLLTNVLDAASEMTIIAADPQGIITIFNRGAERMLWYSAEEIIGK 663
+ + +Q+EK + L +LDAAS IIA D +GIIT+FN AER+L ++A+E++G
Sbjct: 373 LVHERTSQLEK--MGVLQRTILDAAS-YAIIATDTEGIITVFNPSAERLLGFTAKEMVGL 429
Query: 664 TTPAPFHIADEIAARAAELSVEYGQKIQ-GFDTFVHKAREEGSETRTWTYVRKDGSQLPI 722
TPA FH+ +E+ RA +LS E G KI+ GFD FV K+R +T WTYV K G+++ +
Sbjct: 430 QTPAIFHLEEEVVRRATQLSEELGTKIEPGFDAFVAKSRRGKEDTNNWTYVSKSGARITV 489
Query: 723 SLSVTAMRGNDGEILGYLGIGVDISQIVAQQEALLTASNHLSKAA 767
LSVT + G D +I+GYLGI D+++ + +++ L A +A+
Sbjct: 490 KLSVTTLYGEDKDIMGYLGIAYDLTEQLKREQELADAREQALQAS 534
Score = 33.1 bits (74), Expect = 2e-04
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 465 ERHILNLNASLERQVAKRTHALQQALLENQALLDTINQQLHYSVTDLDGVILDVNEHFCL 524
E+ +L+ A LE+ V +RT L++ + + +LD + + TD +G+I N
Sbjct: 360 EKALLSAKAKLEQLVHERTSQLEKMGVLQRTILDAASYAI--IATDTEGIITVFNPSAER 417
Query: 525 ISGYAREELVG 535
+ G+ +E+VG
Sbjct: 418 LLGFTAKEMVG 428