Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 1021 a.a., signal transduction histidine kinase-like protein protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  284 bits (726), Expect = 4e-80
 Identities = 219/724 (30%), Positives = 360/724 (49%), Gaps = 62/724 (8%)

Query: 841  RILTTDGEVRYVQAAAKIERDRQGHVIRVIGINIDITAQRQLEKTLRN------------ 888
            ++   + + +Y QA    +    G V+       D+T  +  E+ + +            
Sbjct: 324  QVFDAEFDDKYFQATYVPDVTNDGEVVGFFACVEDLTPIKANERKIESYALELEHKNADL 383

Query: 889  --AKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAAK 946
              A+++A+ A+  K+ FLA MSHEIRTPMN VLG+L L++ T LS+QQ+ Y+  A T+A+
Sbjct: 384  VEAREKAEAASRIKADFLACMSHEIRTPMNGVLGILSLLEKTELSIQQKHYLDVASTSAE 443

Query: 947  SLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALP 1006
            SLL LLNDILDFSKI++GK ++D  P  +  L+ D     +       ++++ D+     
Sbjct: 444  SLLTLLNDILDFSKIESGKFEIDEVPFDLIQLLDDFIQPFAIRAEAKGLKLLLDISGIHL 503

Query: 1007 AWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGISEE 1066
             W+  D  R++Q+L+NL  NA+KFT  G + V ++     A  V++  SI D+GIGIS++
Sbjct: 504  RWVRGDPGRIRQVLVNLVSNAIKFTEVGWIAVRVQASEDTANGVSLMVSIEDTGIGISKD 563

Query: 1067 QIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFP 1126
            + E +F+ F QA+S+T+R FGGTGLGL+I+KRL ELM G ++V S    GS F F L   
Sbjct: 564  KQEVLFSPFTQADSTTTRHFGGTGLGLSIAKRLCELMDGDIRVISAEDAGSTFKFHLR-- 621

Query: 1127 VMEVEANPRAD----LSGYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQ 1182
             ++ EA   A+    L+    L+  +   +  +L ++L  +                ++ 
Sbjct: 622  -LKSEAASGAEWPPALNCRAPLLAGELGASERMLFELLDSW----------QLRPALLES 670

Query: 1183 ATANAQQFDVVLMDW---RMPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHEVIAESQH 1239
             T  AQ   +   DW    +P+     T E+ K A   +   L  +       +I+  Q 
Sbjct: 671  NTELAQTPALAAADWLIYSVPEHLVSITQELQKMAAFATEKGLKFL------AIISHRQQ 724

Query: 1240 INNVPFV----NFLTKPVTSQILAEAVLNAIEGKTMDANPKPRSQRLLAGLTLLVVEDNQ 1295
            I   P +    ++L +P+ +  L + +L+  +G  +   P     +L     +L+VEDN+
Sbjct: 725  IGLAPTILSSCHYLCRPMQALKLVD-ILSDSDGNDV-VLPDDTQSQLNDSAQILLVEDNK 782

Query: 1296 LNREVIDELLTYEGAT-VVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEATRRIR 1354
            +N+ V   +L   G   V +   G++ +  +      +D ++MD  MP++DG +AT+ IR
Sbjct: 783  VNQMVALGMLRNLGLKHVEVVTNGLQALAAL--QHRQYDLILMDCLMPEMDGYQATQAIR 840

Query: 1355 ---ADGRFDQLPILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLPNILRLVGRDAAQ 1411
               A  +   + I+AMTANA + D++ CLEAGMN +++KP+   ++   + R +  D+  
Sbjct: 841  KGEAGQKHKDIKIVAMTANAMKGDRETCLEAGMNDYIAKPLHQAEVARVLERYIPLDSTS 900

Query: 1412 FAEPESMHLDAQHNLEGETLLDDIRLILRRFGGNQVFFEKMASSFAPEMIKQLSLFKQST 1471
             A          + L  +TLL D    L    G+      +   FA EM   L  F+ + 
Sbjct: 901  CA--------PSNPLSADTLLFDRHCALELMSGDSELLGDILKVFAEEMAVYLEAFESAM 952

Query: 1472 KTFDYATTAAISHAIKGIASNFGARRLAVHAAFLEKQFKQEGLELLEIKR--WTDTLESL 1529
               D+A      HAIKG A N     LA  A  +E   ++     LE  +  + D L   
Sbjct: 953  GRRDFAAVRTAVHAIKGAAGNLCMSPLAGVAKEMEMAARRLDWVYLEAHQAEFIDVLRRT 1012

Query: 1530 INQS 1533
            + QS
Sbjct: 1013 LEQS 1016



 Score = 32.7 bits (73), Expect = 2e-04
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 13/139 (9%)

Query: 380 GFTEPETLGLPSSELIVPPSIVLEEQALFAEVLAGKTVLNRVSRHQR---ADGSNLSTST 436
           G +E E LG   ++++ PP           E L     L  +  +Q+   A+  +     
Sbjct: 288 GKSEAEVLGRSVTDVLPPP----------VEELIVPYQLRALQGNQQVFDAEFDDKYFQA 337

Query: 437 TALPIYDEHGDIVGLSQTIRDITAQQDAERHILNLNASLERQVAKRTHALQQALLENQAL 496
           T +P     G++VG    + D+T  +  ER I +    LE + A    A ++A   ++  
Sbjct: 338 TYVPDVTNDGEVVGFFACVEDLTPIKANERKIESYALELEHKNADLVEAREKAEAASRIK 397

Query: 497 LDTINQQLHYSVTDLDGVI 515
            D +    H   T ++GV+
Sbjct: 398 ADFLACMSHEIRTPMNGVL 416