Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 858 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  310 bits (794), Expect = 4e-88
 Identities = 200/540 (37%), Positives = 293/540 (54%), Gaps = 26/540 (4%)

Query: 875  DITAQRQLEKTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQ 934
            D+T ++  E  LR+A+++A+ AN AKS FLANMSHEIRTP   +LG+L L+ +T L+ +Q
Sbjct: 329  DVTERKAAESELRHAREKAEAANRAKSEFLANMSHEIRTPFTGILGVLDLLLHTPLNEKQ 388

Query: 935  QGYVTKAQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSD 994
            + Y+  A  + K LL +LNDILD SKI+AGKL +      + LL+ +L  V +A      
Sbjct: 389  ERYIRLAYGSTKQLLAILNDILDISKIEAGKLVIHPEEVDLVLLLGELTEVQAAAAAQKG 448

Query: 995  VEVMFDLDSALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQF 1054
            +E  + +   +P  +  D +RL+QI+ NL  NA+KFT  G V + +EC R       ++ 
Sbjct: 449  LEFRYHIKGIIPPKIHGDPVRLRQIMANLLNNAIKFTNSGWVELDIECTRIAPGRQHLRV 508

Query: 1055 SIVDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVG 1114
             + DSGIG+  E  E IF  F QA+SST+R FGGTGLGL I K+LVELM G + V+S  G
Sbjct: 509  EVRDSGIGVPPELQETIFDKFTQADSSTTRLFGGTGLGLTICKQLVELMHGSIGVSSNSG 568

Query: 1115 VGSRFWFDLTFPVMEVEANPRADLSG----------YRILVVDDNQITTEILSKILSDYG 1164
             GS FWFD+  P  +   +P   L             RIL+VDD +   E+L++ L+   
Sbjct: 569  EGSCFWFDIELPESDPTVSPVPVLPAGSPITALPRDTRILLVDDTEANREVLAEYLAQAH 628

Query: 1165 CVVETASGGYQAIEKVKQATANAQQFDVVLMDWRMPDIDGLQTAEMLK-NAGTGSYTPLV 1223
            C V  A+ G +A+       A + Q D +LMD +M  +DG +    ++   G    TP +
Sbjct: 629  CQVRQAANGLEAV-----TLAESWQPDAILMDCQMAGMDGYEATRQIRIQEGQRRRTP-I 682

Query: 1224 VMLTAYGHEVIAESQHINNVPFVNFLTKPVTSQILAEAVLNAIEGKTMDANPKPRSQRLL 1283
            + LTA+   +  + +        ++L KPV +Q L   +   +EG+  +    PR     
Sbjct: 683  IALTAF--VMRGDREKCLAAGMDDYLPKPVDAQTLIATIGKWLEGRETNPARTPRFSG-- 738

Query: 1284 AGLTLLVVEDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPD 1343
                +L+V+DN   RE    LL   G  V  A  G E + Q+    D FD V+MD +MP 
Sbjct: 739  ---RILLVDDNPEIREASTCLLEALGCQVQSASSGEEAL-QLGPEAD-FDLVLMDCRMPG 793

Query: 1344 IDGLEATRRIRADGRFDQLPILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLPNILR 1403
            +DG   TR  RA  R     I+A+TA      + +C EAGMN  ++KP   Q+L+  + R
Sbjct: 794  LDGCATTRAWRARERGTPTAIIALTAGDPDESRAQCREAGMNDFLAKPFSEQELVTLLRR 853