Pairwise Alignments

Query, 154 a.a., formate-dependent nitrite reductase (RefSeq) from Shewanella sp. ANA-3

Subject, 306 a.a., decaheme cytochrome c MtrD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 70.1 bits (170), Expect = 3e-17
 Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 14/131 (10%)

Query: 34  SDACMKCHKRNGQML----GHHGQDAMK------MICSSCHGEKGDHPKKPND-LVVFGL 82
           +D C+ CHK++  ++    G HG   +K      + C +CHG  G+H K   + ++ FG 
Sbjct: 44  ADTCLMCHKKSAVVMAIFDGVHGNPNIKDSPMADLQCEACHGPLGNHNKGGKEPMITFGQ 103

Query: 83  NEASETTVQLQACQKCHRPAKLSSQEWTHNVHAQKVACAACHKLHSPTEPMADMTPKVRS 142
           N       Q   C  CH   +  + +  H+ +A  + C++CH++H   +P++D   +V  
Sbjct: 104 NSPVPAQKQNSVCMSCHNDDQRIAWKGNHHDNAD-IPCSSCHQVHVAKDPISDKANEV-- 160

Query: 143 ELCRNCHTGQQ 153
            +C  CH+ Q+
Sbjct: 161 AICTQCHSQQK 171



 Score = 41.6 bits (96), Expect = 1e-08
 Identities = 36/119 (30%), Positives = 46/119 (38%), Gaps = 25/119 (21%)

Query: 37  CMKCH---KRNGQMLGHHGQDAMKMICSSCHGEKGDHPKKPNDLVVFGLNEAS--ETTVQ 91
           C +CH   K +      H     +M+CS CH   G             LN+AS  + TV 
Sbjct: 163 CTQCHSQQKADMHKRSSHPLQWQQMVCSDCHNPHG------------SLNDASLKQMTVN 210

Query: 92  LQACQKCHRPAKLSSQEWTHNVHAQKVACAACHKLH-SPTEPMADMTPKVRSELCRNCH 149
            + C  CH   K   + W H        CA CH  H S  E M    P    +LC+ CH
Sbjct: 211 -ENCYSCH-AEKRGPKLWEHAPVTDN--CANCHNPHGSVNESMLISKP---PQLCQQCH 262



 Score = 32.0 bits (71), Expect = 9e-06
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 19/116 (16%)

Query: 22  SASSAEPARQINSDACMKCH-KRNGQMLGHHGQDAMKMICSSCHGEKGDHPKKPNDLVVF 80
           S + A   +   ++ C  CH ++ G  L  H        C++CH   G            
Sbjct: 198 SLNDASLKQMTVNENCYSCHAEKRGPKLWEHAPVTDN--CANCHNPHGS----------- 244

Query: 81  GLNEASETTVQLQACQKCHRPAKLSSQEW---THNVHAQKVACAACH-KLHSPTEP 132
            +NE+   +   Q CQ+CH     SS  +     N      +C  CH ++H    P
Sbjct: 245 -VNESMLISKPPQLCQQCHASDGHSSNAYFGNQTNAFTSGNSCMNCHGQVHGSNHP 299