Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

Subject, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  474 bits (1220), Expect = e-138
 Identities = 265/628 (42%), Positives = 391/628 (62%), Gaps = 11/628 (1%)

Query: 5   SLKQKILISVVIALSLVISLLSWQSYSSQKSLLLQNSLEQVQRLGEQQAERIQEWLAGRQ 64
           SLK+K++ SVV+A+++  + L    Y + +    +    + +   +  A+ I +W  G+Q
Sbjct: 14  SLKRKMVFSVVVAIAVTAAALVAAGYQTFEKDSWRAIESESRNTLQAHAKGIGDWFLGKQ 73

Query: 65  DIVGALASKVEDNS----LSALQQAQASGRFQLTYYGTETGQMLDSDPSIDRTGYDPRTR 120
             +  L  ++E N     +  L+Q   SG F L+YYG E G+M   DPS++   YDPR R
Sbjct: 74  LALKGLREEIERNPQLELVPHLRQTLQSGSFGLSYYGNEQGEMFRQDPSLNTADYDPRVR 133

Query: 121 PWYKQAMNERGLILTKPYVDVAYNVLVVTMAQATSQ-----GVVGGDLSIASLVESVNRM 175
            WYK+A      I T+PYV V    LVVT+A+         GV   +L++  L++ V  +
Sbjct: 134 GWYKEAKAAGKPITTEPYVSVTMQTLVVTLAEPVRYQGQLIGVAASNLALDKLIKDVLAI 193

Query: 176 TLPANGYAIMMHKDGTVIAYKDASKAMKPVGQIDNDLNHDLPQQSRQAGTLLPMYFENEG 235
            +P  GYAI++++ G ++A+      +KP  ++   L       + +  +L  +  +  G
Sbjct: 194 EVPGKGYAILVNQKGKIVAHPTQDLILKPTEEMSAQLTISKLNIAAKDHSLFQLSMD--G 251

Query: 236 RDKLVWGVDIPNTDWELVIVLDKETLEAPLTDLLLTQFGLSAVVLLLSVLAISWLVNLLL 295
           RDK++   ++ NTDW LV+V+DK  LE PL D+L+ Q G+   +LL+  L  SW V   L
Sbjct: 252 RDKVLMAEEVANTDWLLVMVMDKGVLEQPLNDMLMVQIGIGLGILLVMALLTSWFVARQL 311

Query: 296 GPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNRFVGSQHQLISHIRQLASEL 355
             LG ++ ALA IA+G+GDLT+R++V +QDEVG+LAD FN+FV   HQ++ ++R+++  L
Sbjct: 312 NELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLHQMVKNVREVSVAL 371

Query: 356 DADAERSLKTNHIAVAELQRQQQEVAMVATAVTEMASATNEIAANAENTATAAQQSAASS 415
              A+ +  +   A   ++ QQ E+ MVATAVTEMASAT EIA+NAENTA  A QS    
Sbjct: 372 TQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENTAKNATQSVQLG 431

Query: 416 FQGKELVNKTRSSINSLADEVAQATDVIEDLSRHAQSISSILATIQGIAEQTNLLALNAA 475
             G   + +++ SI+ LA E+  A  +I +L  HA  IS+IL+TI+GIAEQTNLLALNAA
Sbjct: 432 EDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGIAEQTNLLALNAA 491

Query: 476 IEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETLQRTTAKAVSLMESSQMLAG 535
           IEAARAGEQGRGFAVVADEVRVLS+RT  ST+E+   I  LQ+ T  AVS+M  S  L  
Sbjct: 492 IEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAVSVMTESHKLVE 551

Query: 536 NSVEDANAAAKALEEITQAVNVISDMAGQIATAAEEQTQVTGEITQNTVAIKDVTDEITE 595
            SV D N    +L+ I++A+  ISDMA QIA+AAEEQ+ VT +I  NT ++++V+D++ E
Sbjct: 552 TSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVNTESVREVSDQLAE 611

Query: 596 AAKSDLTQAQALKARANDLNAQVATFIL 623
            A+  + QA++L A A +LN +++ F L
Sbjct: 612 EAQQSVQQAKSLHAMAQELNKEISRFKL 639