Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

Subject, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  437 bits (1125), Expect = e-127
 Identities = 256/626 (40%), Positives = 379/626 (60%), Gaps = 9/626 (1%)

Query: 5   SLKQKILISVVIALSLVISLLSWQSYSSQKSLLLQNSLEQVQRLGEQQAERIQEWLAGRQ 64
           +LK K++ + + A+ ++ + L+W S S  +         +   +    A+ I +W++ R+
Sbjct: 8   TLKHKLIGASLSAVVVMATALTWFSASQLQQQTSNAVYTRADAISSTAAKGISDWISIRK 67

Query: 65  DIVGALASKVE-DNSLSALQQAQASGRFQLTYYGTETGQMLDSDPSIDRTGYDPRTRPWY 123
            I  A  + +E  N +  LQQA+ +G F   +YGT  G M  S P  +R  YDPRTRPWY
Sbjct: 68  SISTAFNAHIEAQNVVPYLQQARNAGGFDDIFYGTTDGAMYRSHPERNRADYDPRTRPWY 127

Query: 124 KQAMNERGLILTKPYVDVAYNVLVVTMAQ-----ATSQGVVGGDLSIASLVESVNRMTLP 178
           K A +    I+T  Y D     L+VT+A+         GVVG D+ I  L+  V  M   
Sbjct: 128 KDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGVVGADVLIDQLIADVISMDAG 187

Query: 179 ANGYAIMMH-KDGTVIAYKDASKAMKPVGQIDNDLNHDLPQQSRQAGTLLPMYFENEGRD 237
            N   +++  ++G+ +A+ D S  +KPV  + + L+    +++   G LL +     G +
Sbjct: 188 KNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGELLALKLN--GVE 245

Query: 238 KLVWGVDIPNTDWELVIVLDKETLEAPLTDLLLTQFGLSAVVLLLSVLAISWLVNLLLGP 297
           K  +   +P+T W   + +D +T  A  ++LL      + ++ ++ V+ +SWLV+ L   
Sbjct: 246 KFFFFTAVPDTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVSWLVSFLFRD 305

Query: 298 LGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNRFVGSQHQLISHIRQLASELDA 357
           LGRVS+AL  IA G+ DLTQR+E  + DEVG LA +FN FV + H ++  +  +++ L  
Sbjct: 306 LGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLKLSHVSAALAQ 365

Query: 358 DAERSLKTNHIAVAELQRQQQEVAMVATAVTEMASATNEIAANAENTATAAQQSAASSFQ 417
            ++ +        + ++ QQ E+ MVATA+ EMA+AT EIA NA++TA  A ++  +   
Sbjct: 366 QSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAGEAVTACVH 425

Query: 418 GKELVNKTRSSINSLADEVAQATDVIEDLSRHAQSISSILATIQGIAEQTNLLALNAAIE 477
           G   V +T+ SI SLA+EV  AT+VI++L  H   IS+IL+TIQ IAEQTNLLALNAAIE
Sbjct: 426 GAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNLLALNAAIE 485

Query: 478 AARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETLQRTTAKAVSLMESSQMLAGNS 537
           AARAGEQGRGFAVVADEVRVLS+RT  ST+E+   IETLQ TT KAV +M+ S+ LA  S
Sbjct: 486 AARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDDSRRLADTS 545

Query: 538 VEDANAAAKALEEITQAVNVISDMAGQIATAAEEQTQVTGEITQNTVAIKDVTDEITEAA 597
           V+DAN A+ +LE+I + V  ISDMA QIA+AAEEQ  VT EIT+NTV I+DV++++ + A
Sbjct: 546 VDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRDVSNDLAQEA 605

Query: 598 KSDLTQAQALKARANDLNAQVATFIL 623
            S   QA  L   +++L  ++  F L
Sbjct: 606 HSAAEQAAELSELSHELEQEIRRFKL 631