Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

Subject, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  244 bits (624), Expect = 6e-69
 Identities = 174/630 (27%), Positives = 316/630 (50%), Gaps = 29/630 (4%)

Query: 10  ILISVVIALSLVISLLSWQSYSSQKSLLLQNSL-EQVQRLGEQQAERIQEWLAGRQDIVG 68
           I  S++I +S +++       +      +++++ E +  L ++    I+  +   + ++ 
Sbjct: 10  IFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSIESKVDVSKSVID 69

Query: 69  ALASKVEDNS-LSALQQAQA---SGRFQLTYYGTE-TGQMLDSDPSID-RTGYDPRTRPW 122
              + +E  S LS  +       S  FQL  Y  E TG+++ +DP+    TG+DPRTR W
Sbjct: 70  IYENLLEGESPLSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFKVPTGFDPRTRSW 129

Query: 123 YKQAMNERGLILTKPYVDVAYNVLVVTMAQATSQ-----GVVGGDLSIASLVESVNRMTL 177
           Y  A       L++PYVD+    L+VT +          GV+  D+ +  + E +     
Sbjct: 130 YLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDIPLDDVQELIKSYNP 189

Query: 178 PANGYAIMMHKDGTVI-AYKDASKAMKPVGQIDNDLNHDLPQQSRQAGTLLPMYFENEGR 236
              G   ++   G +I   K+        G  D+      P    ++ T        + +
Sbjct: 190 FDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDS-----FPLSVSESKT--------KDK 236

Query: 237 DKLVWGVDIPNTD---WELVIVLDKETLEAPLTDLLLTQFGLSAVVLLLSVLAISWLVNL 293
           + + + V I  +D   W LV ++D +   + +  L       + ++  +    + + + L
Sbjct: 237 NGVNYDVLIKMSDFGGWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAILLFTMRL 296

Query: 294 LLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNRFVGSQHQLISHIRQLAS 353
           +L PL +++ A+  I+ G+ DLT RI   T  E   + +SFN FVG+   ++S ++  + 
Sbjct: 297 MLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSE 356

Query: 354 ELDADAERSLKTNHIAVAELQRQQQEVAMVATAVTEMASATNEIAANAENTATAAQQSAA 413
           +++     + +   +    +  Q +E+ M+A+++ EM + +N+IA      +    +   
Sbjct: 357 KINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEITSKING 416

Query: 414 SSFQGKELVNKTRSSINSLADEVAQATDVIEDLSRHAQSISSILATIQGIAEQTNLLALN 473
              +G   V+    S+ +L +++ +   VI+DL+R  Q+I  IL  I  IA+QTNLLALN
Sbjct: 417 QVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALN 476

Query: 474 AAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETLQRTTAKAVSLMESSQML 533
           AAIEAARAGE GRGFAVVADEVR L+ +TQ+ST+ + + I  LQ  +  +V +M+ S  +
Sbjct: 477 AAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNI 536

Query: 534 AGNSVEDANAAAKALEEITQAVNVISDMAGQIATAAEEQTQVTGEITQNTVAIKDVTDEI 593
           A  ++  +  + + L+ I+Q+V  I D+  Q+ATAA EQ+ V+ EI  N+++IKD  D +
Sbjct: 537 ASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSISIKDKADTL 596

Query: 594 TEAAKSDLTQAQALKARANDLNAQVATFIL 623
           +        QA + KA     +  ++ FI+
Sbjct: 597 SSLGNKISQQAYSQKALIGHQDDLISKFII 626