Pairwise Alignments

Query, 554 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella sp. ANA-3

Subject, 555 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Pseudomonas fluorescens FW300-N1B4

 Score =  434 bits (1116), Expect = e-126
 Identities = 232/559 (41%), Positives = 332/559 (59%), Gaps = 14/559 (2%)

Query: 1   MDNAIKTPVEMLAHWANTRGDEIYLRQPIKGQYLD-FTWNEVQEKVQQLAGALRHLGLEP 59
           M  A + P++           + +L QP  G  ++  TW +V  + +  A  LR   L  
Sbjct: 1   MSAAFRLPLDAFYERETRHPRQRFLVQPTGGGQVETLTWADVGHQARCAAHWLRARELPQ 60

Query: 60  GDKIAVLSKNCAEWFITDLALMHGGYISVPIYPTANTDTIRYVLQHSGAKAIFLGKLDHW 119
           G  IA++SKNCA W I DLA+   G++SVP+YP    D++  VL HS A  +F+GKLD W
Sbjct: 61  GSHIALISKNCAHWIIADLAIWMAGHVSVPLYPNLTADSVAQVLDHSEAALVFIGKLDDW 120

Query: 120 ADQEAGVGGELLRLAMPYETMPA---QYQWEQLLKMGNPLIEAPLPELDQTMTLIYTSGS 176
               AGV  +L  +++P    PA    + W  L +  +P+ + P P  DQ  T+IYTSG+
Sbjct: 121 PGMSAGVRSDLPTISLPL--CPAGTFDFSWADLQR-SSPIQDDPKPTADQLATIIYTSGT 177

Query: 177 TGQPKGAIQTFASYGWTCQAVVRDLRTNGNDRLLSYLPLAHITERVAIEGSSFYSGSTVA 236
           TGQPKG + +F + G+      +    N +DRLLSYLPL H+ ER+ +E +S Y+G TV 
Sbjct: 178 TGQPKGVMHSFGNLGFATTRGTQLFGLNESDRLLSYLPLCHVAERMFVELASIYTGQTVF 237

Query: 237 FVESLDSFVADVQRAKPTVFFSVPRLWSLFQKNIIDKIGVGKLNLLLKIPLISSLVKHKI 296
           F ESLD+F+ D++RA+PT  F VPR+W+ FQ  +   I   +L+ LL +P I   V HK+
Sbjct: 238 FAESLDTFLTDLKRARPTALFGVPRIWTKFQMGVYSNIPAKRLDFLLGLPFIGKRVGHKV 297

Query: 297 HKGLGLNHCRLLGSGSAPIPPSLIHWYHSIGLDICEAWGMTENCAYSIINYPFDVRKIGT 356
             GLGL+  R+  SG+AP+P +L+ WY  +GLD+ E +GMTE+C YS I  P    K G 
Sbjct: 298 LAGLGLDALRIALSGAAPVPQTLLLWYRKLGLDVLEVYGMTESCGYSHIGLP-GQNKPGW 356

Query: 357 VGKPVQDCQIRQGEDGELLLKSPGLMTAYYLQPEATAAAFDPDGFFHTGDLCAIDADGCV 416
           +GKP  + ++R    GE+L++S   M  Y+ +P  TA A   DGF  TGD    DA+G +
Sbjct: 357 IGKPCPEVEVRIEPSGEVLVRSGATMLGYFKEPGKTAEAITKDGFLRTGDKGEEDAEGNL 416

Query: 417 TITGRVKDNFKTAKGKYVAPVPIERKLAQDPHVELICVIGSGLPHPVALVQLS----EGA 472
            +TGR+K+ FKT+KGKYVAP PIE +LA    +E +CV+G GL  P+ L  LS    + A
Sbjct: 417 RLTGRLKEIFKTSKGKYVAPAPIENRLAVHARIEQVCVVGDGLSAPLGLCVLSAVGQQDA 476

Query: 473 TLQAREEVRTSLKATLDSVNPHLESHEHVDAIVVVNEPWTIENDVLTPTLKIKRHVLEKA 532
              AR  + +SL+  L+ VN  L+ HE +  +VVV + W +EN  LTPTLKIKR+++E A
Sbjct: 477 KGSARAGLHSSLEKLLEEVNGVLDRHERLRRLVVVKDSWAVENGFLTPTLKIKRNMIEAA 536

Query: 533 FSERVD--GIRGAQVRWED 549
           +  R +    R   V W+D
Sbjct: 537 YGARFEEWSERSEAVLWQD 555