Pairwise Alignments

Query, 554 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella sp. ANA-3

Subject, 601 a.a., putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  201 bits (511), Expect = 7e-56
 Identities = 149/586 (25%), Positives = 268/586 (45%), Gaps = 66/586 (11%)

Query: 16  ANTRGDEIYLRQPI--KGQYLDFTWNEVQEKVQQLAGALRHLGLEPGDKIAVLSKNCAEW 73
           A   GD + LR       Q++  TWN+    V+Q A A   LG+E  + I + S+N  EW
Sbjct: 14  AEKYGDRVALRYRDYETAQWIPITWNQFSGTVRQAANAFVALGVEEQENIGIFSQNKPEW 73

Query: 74  FITDLALMHGGYISVPIYPTANTDTIRYVLQHSGAKAIFLGKLDHW--ADQEAGVGGELL 131
           F  D        +++P Y T++    +Y++  +  + +F+G+   +  A    G    L 
Sbjct: 74  FYVDFGAFANRGVTIPFYATSSPAQAQYIINDAQIRYLFVGEQYQYDSAFSIFGFCSSLQ 133

Query: 132 RLAMPYETMP------AQYQWEQLLKMGNPLIEAPLPE-------LDQTMTLIYTSGSTG 178
           +L +   ++       +   +++ + MG  L    + E        D    ++YTSG+TG
Sbjct: 134 QLIIFDRSVVKDPRDVSSIYFDEFMAMGEGLPHNEVVEERTARASYDDLANILYTSGTTG 193

Query: 179 QPKGAIQTFASYGWTCQAVVRDLRT-NGNDRLLSYLPLAHITERVAIEGSSFYSGSTVAF 237
           +PKG +   + Y          L T    D  +++LPL H+ E+        + G  +  
Sbjct: 194 EPKGVMLHHSCYLEQFHTHDERLTTMTDKDVSMNFLPLTHVFEKAWCY-LCIHKGVQICI 252

Query: 238 VESLDSFVADVQRAKPTVFFSVPRLWS---------------LFQKNIIDKIGVGKLN-- 280
                     ++  +PT+  SVPR W                L +  ++D I VG+++  
Sbjct: 253 NLRPADIQTTIKEIRPTLMCSVPRFWEKVYAGVQEKINETTGLKKALMLDAIKVGRIHNL 312

Query: 281 ---LLLKIPLISSLVKHKIH---------KGLGLNHCRLLGSGSAPIPPSLIHWYHSIGL 328
               L K P + + +K+K +         K +G+ +     +  A +P  +  + HS+G+
Sbjct: 313 DYLRLGKTPPVMNQLKYKFYEKTIYSLLKKTIGIENGNFFPTAGAAVPDEINEFVHSVGI 372

Query: 329 DICEAWGMTENCAYSIINYPFDVRKIGTVGKPVQDCQIRQGEDGELLLKSPGLMTAYYLQ 388
           ++   +G+TE+ A      P     IG+VG  +   +++ GED E+LL+   +   YY +
Sbjct: 373 NMVVGYGLTESTATVSCTLPVGY-DIGSVGVVLPGLEVKIGEDNEILLRGKSITKGYYKK 431

Query: 389 PEATAAAFDPDGFFHTGDLCAIDADGCVTITGRVKDNFKTAKGKYVAPVPIERKLAQDPH 448
            EATAAA D DG+FHTGD      +G + +T R+KD FKT+ GKY+AP  +E KL  D +
Sbjct: 432 AEATAAAIDADGWFHTGD-AGYFKNGQLFLTERIKDLFKTSNGKYIAPQALETKLVIDRY 490

Query: 449 VELICVIGSGLPHPVAL----------------VQLSEGATLQAREEVRTSLKATLDSVN 492
           ++ I +I        AL                ++  + A L    ++    +A ++++ 
Sbjct: 491 IDQIAIIADQRKFVSALIVPVYGFVKDYAKEKGIEYKDMAELLQHPKIVGLFRARIETLQ 550

Query: 493 PHLESHEHVDAIVVVNEPWTIENDVLTPTLKIKRHVLEKAFSERVD 538
                +E +    ++ EP+++E   LT TLK+KR V+ + + E ++
Sbjct: 551 QQFAHYEQIKRFTLLPEPFSMERGELTNTLKLKRSVVSENYKELIE 596