Pairwise Alignments

Query, 554 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella sp. ANA-3

Subject, 552 a.a., putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  155 bits (391), Expect = 5e-42
 Identities = 135/529 (25%), Positives = 232/529 (43%), Gaps = 44/529 (8%)

Query: 38  WNEVQEKVQQLAGALRHLGLEPGDKIAVLSKNCAEWFITDLALMHGGYISVPIYPTANTD 97
           + +V  K+++L       G+  GDKIAV  +N + W +T LA +  G + VPI      D
Sbjct: 32  YKDVARKIEKLHIIFEESGIRKGDKIAVCGRNSSHWGVTFLATLTYGAVIVPILHEFKAD 91

Query: 98  TIRYVLQHSGAKAIFLGKLDHWADQEAGVG---GELL------------RLAMPYETMPA 142
            +  ++ HS AK +F+G +      E+ +    G L+            RL    E +  
Sbjct: 92  NVHNIVNHSEAKLLFVGDMVWENLNESAMPLLEGILMMNDFTLLVSRSERLTHAREHLNE 151

Query: 143 QYQWEQLLKMGNPLIEAPLPELDQTMTLIYTSGSTGQPKGAIQTFASYGWTCQAVVRDLR 202
            +  +         IE    E ++   + YTSG+T   KG +  + S     +     L 
Sbjct: 152 MFGKKYPKNFRKEHIEYHKDEPEELAVINYTSGTTSYSKGVMLPYRSLWSNTKFAYEVLE 211

Query: 203 TNGNDRLLSYLPLAHITERVAIEGSSFYSGSTVAFVESLDS---FVADVQRAKPTVFFSV 259
               D+++S LP+AH+          F  G  + F+  + S        +  KP +  +V
Sbjct: 212 LKAGDKIVSMLPMAHMYGLAFEFLYEFSVGCHIYFLTRMPSPKIIFQAFEEVKPNLIVAV 271

Query: 260 PRLWS-LFQKNIIDKIGVGKLNLLLKIPLISSLVKHKIH----KGLGLNHCRLLGSGSAP 314
           P +   + +K+++ K+    + +LLK+P+I+  +K  I     K  G N   ++  G+A 
Sbjct: 272 PLIIEKIIKKSVLPKLETPTMKILLKVPIINDKIKATIREEMIKAFGGNFREIIVGGAA- 330

Query: 315 IPPSLIHWYHSIGLDICEAWGMTENCAYSIINYPFDVRKIGTVGK--PVQDCQIRQGED- 371
               +  +   I       +GMTE C   I    +   K G+ GK  P  D ++   +  
Sbjct: 331 FNQEVEQFLKMIDFPYTVGYGMTE-CGPIICYEDWTRFKPGSCGKAAPRMDVRVLSSDPE 389

Query: 372 ---GELLLKSPGLMTAYYLQPEATAAAFDPDGFFHTGDLCAIDADGCVTITGRVKDNFKT 428
              GE++ K P +M  YY   EAT A  D DG+ HTGDL  +DA+G +TI GR K+   +
Sbjct: 390 NIVGEIVCKGPNVMLGYYKNSEATEAVIDKDGWLHTGDLALMDAEGNITIKGRSKNLLLS 449

Query: 429 AKGKYVAPVPIERKLAQDPHVELICVIGS-----GLPHPVALVQLSEGATLQAREEVRTS 483
           A G+ + P  IE KL   P+V    ++       GL +P      + G      E++   
Sbjct: 450 ASGQNIYPEEIEDKLNNLPYVSESIIVQQNEKLVGLVYPDFDEAFAHGL---KNEDIERV 506

Query: 484 LKATLDSVNPHLESHEHVDAIVVVNEPWTIENDVLTPTLKIKRHVLEKA 532
           ++    ++N  L ++  +  + +  E +       TP   IKR++ ++A
Sbjct: 507 MEENRVALNAMLPAYSQILKMKIYPEEFE-----KTPKKSIKRYLYQEA 550