Pairwise Alignments

Query, 554 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella sp. ANA-3

Subject, 554 a.a., putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  153 bits (386), Expect = 2e-41
 Identities = 122/443 (27%), Positives = 196/443 (44%), Gaps = 35/443 (7%)

Query: 38  WNEVQEKVQQLAGALRHLGLEPGDKIAVLSKNCAEWFITDLALMHGGYISVPIYPTANTD 97
           + +V  K+ +    L   G++PGDKIAV  +N A W +T LA +  G + VPI      D
Sbjct: 34  YKDVARKIAKFHIVLESAGIQPGDKIAVCGRNSAHWGVTFLATITYGAVIVPILHEFKAD 93

Query: 98  TIRYVLQHSGAKAIFLGK----------------LDHWADQEAGVG-GELLRLAMPYETM 140
            I  ++ HS AK +F+G                 +    D  A V   E L  A  +   
Sbjct: 94  NIHNIVNHSEAKLLFVGDQAWENLNEDAMPLLEGIASLTDFTALVSRNEKLTYAFEHRNA 153

Query: 141 PAQYQWEQLLKMGNPLIEAPLPELDQTMTLIYTSGSTGQPKGAIQTFASYGWTCQAVVRD 200
               ++ +  +  +       PE  +   + YTSG+TG  KG +  + S           
Sbjct: 154 IYGQRYPKNFRPEHICYRKDRPE--ELAIINYTSGTTGYSKGVMLPYRSIWSNVAYCFEM 211

Query: 201 LRTNGNDRLLSYLPLAHITERVAIEGSSFYSGSTVAFVESLDS---FVADVQRAKPTVFF 257
           L     D ++S LP+ H+   V      F +G+ + F+  + S           KP V  
Sbjct: 212 LPVKAGDHIVSMLPMGHVFGMVYDFLYGFSAGAHIYFLTRMPSPKIIAQSFAEIKPRVIS 271

Query: 258 SVPRLWS-LFQKNIIDKIGVGKLNLLLKIPLISSLVKHKIHKG----LGLNHCRLLGSGS 312
            VP +   + +K+I+ ++      LLLK+P+++  +K    +      G N   ++  G 
Sbjct: 272 CVPLIVEKIIKKDILPRVDSKIGKLLLKVPIVNDKIKSLARQAAMEIFGGNFDEII-IGG 330

Query: 313 APIPPSLIHWYHSIGLDICEAWGMTENCAYSIINYPFDVRKIGTVGKPVQDCQIR----- 367
           AP    +  +   IG     A+GMTE C   I +  ++  K+ + GK     ++R     
Sbjct: 331 APFNAEVEAFLKKIGFPYTIAYGMTE-CGPIICSSRWETLKLASCGKATTRMEVRIDSPD 389

Query: 368 -QGEDGELLLKSPGLMTAYYLQPEATAAAFDPDGFFHTGDLCAIDADGCVTITGRVKDNF 426
            +   GE++ +   +M  YY  PEATA   D +G+ HTGDL  ID +G VT+ GR K+  
Sbjct: 390 PKTHAGEIVCRGMNMMLGYYKNPEATAQIIDANGWLHTGDLGTIDDEGYVTVRGRSKNLL 449

Query: 427 KTAKGKYVAPVPIERKLAQDPHV 449
            T+ G+ + P  IE KL   P+V
Sbjct: 450 LTSSGQNIYPEEIESKLNNMPYV 472