Pairwise Alignments

Query, 425 a.a., restriction modification system DNA specificity subunit (RefSeq) from Shewanella sp. ANA-3

Subject, 462 a.a., restriction endonuclease subunit S from Vibrio cholerae E7946 ATCC 55056

 Score = 46.6 bits (109), Expect = 2e-09
 Identities = 72/298 (24%), Positives = 116/298 (38%), Gaps = 36/298 (12%)

Query: 143 TTAQGIQQKRLVTLDVVLPPLPEQQKIAKIL----TSVDEVIEKTQAQIDKLKDLKTGMM 198
           T  Q +     +     +P   EQ +IAK L    T ++E I   Q QI+ LK+ K  ++
Sbjct: 179 TGIQNLDASSYLNEKFCIPQKEEQYEIAKFLDNKTTQINEAIAIKQKQIELLKERKQIII 238

Query: 199 QELLTQGVGIDGKPHTEFKDSPVGRIPKAWNCVTLKNLSKRITDGTHQTVKTSPDGTIPF 258
           Q+ +TQG+  D        D  +G IP  W     K L   I +        S  G    
Sbjct: 239 QQAVTQGLNPDATMKYSGVDW-IGAIPGHWIVKRAKYLLDEINE-------RSETGLEEL 290

Query: 259 LYVSCVRDGNIDWEKASFLTEEMYELASKGRKPENGDILYT-------AVGSYGHAAIVS 311
           L VS +       EK   +T  M E  +  +   +GD++         A+G      IVS
Sbjct: 291 LSVSHMTGVTPRSEKN--VTMFMAEDYTGSKLCHSGDLVINIMWAWMGALGVSDRTGIVS 348

Query: 312 GD-NRFSFQRHIAFIQPNHEKI--DSEFLVSFLNSPLGKKQADLYAIGNAQLTVTLGDLG 368
                F  QR   F+    E +   ++++  +     G   + L   G+    + LG   
Sbjct: 349 PSYGVFREQREGTFVPKYLEMLLKSTKYVEYYNKVSTGLHSSRLRFYGHMLFDMALG--- 405

Query: 369 KFKVALPDIAEQQRIAKIF----NGIDNRIIVVQRKLTSLGNTKKALMQDLLTGKVRV 422
                 P   EQ +I +      + +D  I V   +++ L   K  L+   +TGK++V
Sbjct: 406 -----FPPYEEQTQIVEYISRECSKVDEAITVQAEQVSKLKEYKTTLINSAVTGKIKV 458