Pairwise Alignments

Query, 493 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (RefSeq) from Shewanella sp. ANA-3

Subject, 494 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE from Phaeobacter inhibens DSM 17395

 Score =  254 bits (649), Expect = 5e-72
 Identities = 178/460 (38%), Positives = 235/460 (51%), Gaps = 31/460 (6%)

Query: 23  LTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGATAVLVHTDKIDEQGKV-IATEQGV 81
           + +DSR +  G +F ALPG +V G +F   AL  GA A+L  TD    Q    +  E  V
Sbjct: 27  IAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAIL--TDAAGAQIVAQLLRESTV 84

Query: 82  QIYFYQLARQVSAVAAVRYPVVQGQSMGIVGITGTNGKTSTSQLCAQLVTLLEGKAAVMG 141
            +   +  RQ  A AA  +   Q ++M  V +TGTNGKTS +    Q+   L  +A  +G
Sbjct: 85  ALVVVEDPRQALAYAAALWFGAQPETM--VAVTGTNGKTSVASFVRQIWVELGHQAVNLG 142

Query: 142 TLG-NGLWGELVDSGNTTADAITLMRQLHEFADKGVNTCAMEVSSHGLVQGRVDAVPFDV 200
           T G  G W   ++  +TT + +TL   L + A  GV   AME SSHGL Q R+D V    
Sbjct: 143 TTGVEGSWSHPLN--HTTPEPVTLHDALAQAAAAGVTHAAMEASSHGLEQRRLDGVHLAA 200

Query: 201 AVFTNLTRDHLDYHGDMENYAEAKQMLFRFDSLLHGL--VNLDDP-------VGAAWLSE 251
           A FTN T+DHLDYH   E Y  AK  LFR      G+  +N+DDP       V AA   E
Sbjct: 201 AGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGEQMRAVAAARGHE 260

Query: 252 LANVPAKMWGFSIEAHTEVAFYTKNAQFNDQGVQATLVWPEGEVDIRSPLLGAFNLSNLL 311
           + +V   +   S+            A+++  G      W +     R  L+G F   N+L
Sbjct: 261 VISVGRGLGDLSLVG----------ARYDASGQDMRFTWHDKPYQARLNLIGGFQAENIL 310

Query: 312 AALSALYLQGMDMRALASKVPYLVPVAGRMERFTTADN-ITLVVDYAHTPDAIEQALNAL 370
            A   +   G D +A+   +P+L  V GRM+   T +N  T+ VDYAHTPDA+  A+ AL
Sbjct: 311 LACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGATVFVDYAHTPDAVATAIKAL 370

Query: 371 RRHCAGELWCVFGCGGDRDKGKRPLMGQAAEQCADRIMVTSDNARSEDPNQIITDIIQGL 430
           R H  G L  + G GGDRD  KRPLMGQAA+  AD ++VT DN RSEDP  I   +  G 
Sbjct: 371 RPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAVIRAAVKGGA 430

Query: 431 THPERALTEVDRVAAIKHVVAQAKPGDVILLAGKGHETYQ 470
                A+   DR  AI   V     GD +L+ GKGHET Q
Sbjct: 431 PD---AMEVGDRAEAILRGVDALGAGDALLICGKGHETGQ 467