Pairwise Alignments

Query, 493 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (RefSeq) from Shewanella sp. ANA-3

Subject, 493 a.a., UDP-N-acetylmuramyl-tripeptide synthetase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  280 bits (716), Expect = 8e-80
 Identities = 186/463 (40%), Positives = 242/463 (52%), Gaps = 14/463 (3%)

Query: 23  LTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGATAVLVHTDKIDEQGKVIATEQGVQ 82
           L LDSR ++ G +F  LPG +V G +FI  AL  GA A+L   +       V+   +   
Sbjct: 25  LALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEGARIARDVLDGAEVTL 84

Query: 83  IYFYQLARQVSAVAAVRYPVVQGQSMGIVGITGTNGKTSTSQLCAQLVTLLEGKAAVMGT 142
           I      +  SA AA+ Y     Q   +VG+TGTNGKTS +    QL   L   AA +GT
Sbjct: 85  IVAEDPRQAFSAAAALWYGA---QPATMVGVTGTNGKTSVASFTRQLWQGLGHAAANIGT 141

Query: 143 LGNGLWGEL-VDSGNTTADAITLMRQLHEFADKGVNTCAMEVSSHGLVQGRVDAVPFDVA 201
              G+ G+   D  +TT D +TL   L E A +G+   AME SSHGL Q R+D V    A
Sbjct: 142 --TGIEGDFSADLAHTTPDPLTLHAALAEMAAQGITHAAMEASSHGLDQRRLDGVRLVAA 199

Query: 202 VFTNLTRDHLDYHGDMENYAEAKQMLFRFDSLLHGL--VNLDDPVGAAWLSELANVPAKM 259
            FTN ++DHLDYH   E Y  AK  LF       G+  +NLDDP GA  ++      A++
Sbjct: 200 GFTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINLDDPKGADMMAIAHGAGAEL 259

Query: 260 WGFSIEAHTEVAFYTKNAQFNDQGVQATLVWPEGEVDIRSPLLGAFNLSNLLAALSALYL 319
              ++  H +        +F+  G +    W       R  L+G F  SN+L A+  +  
Sbjct: 260 --LTVGTHKDAMLRLTAQRFDADGQEMRFTWKGVAHQARLNLVGGFQASNVLVAMGLVMA 317

Query: 320 QGMDMRALASKVPYLVPVAGRMERFTTADN-ITLVVDYAHTPDAIEQALNALRRHCAGEL 378
            G  +  L   +P L  V GRM++    +N  T+ VDYAHTPDA++ AL ALR H  G L
Sbjct: 318 TGAQVGDLVPLLPRLATVRGRMQKVARRENGATVFVDYAHTPDALKTALRALRPHVLGRL 377

Query: 379 WCVFGCGGDRDKGKRPLMGQAAEQCADRIMVTSDNARSEDPNQIITDIIQGLTHPERALT 438
             VFG GGDRD GKRPLMG AA   AD + VT DN RSEDP  I   +  G   PE A  
Sbjct: 378 VVVFGAGGDRDSGKRPLMGAAAAAAADVVFVTDDNPRSEDPALIRAQVRAGC--PE-ATD 434

Query: 439 EVDRVAAIKHVVAQAKPGDVILLAGKGHETYQEAAGVRHDYDE 481
             DR  AI   V   +PGDV+L+AGKGHET Q    V + +D+
Sbjct: 435 VPDRAEAILRGVDALEPGDVLLIAGKGHETGQTVGDVVYPFDD 477