Pairwise Alignments

Query, 493 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (RefSeq) from Shewanella sp. ANA-3

Subject, 482 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  272 bits (696), Expect = 2e-77
 Identities = 175/499 (35%), Positives = 264/499 (52%), Gaps = 31/499 (6%)

Query: 2   MLLRDLLAPWFPY--AGEQTFLELT---LDSRAIRRGDVFLALPGHKVDGRQFIDKALAQ 56
           MLL +LL    P    G+   +E+T   +DSR +  G +F+A+ G + DG  +I  A+ +
Sbjct: 1   MLLNELLKAIQPVQVTGDSR-IEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQK 59

Query: 57  GATAVLVHTDKIDEQGKVIATEQGVQIYFYQLARQVSAVAAVRYPVVQGQS--MGIVGIT 114
           GATA+L            I  E    I + Q+     AV  +        +    +VG+T
Sbjct: 60  GATAILCED---------IPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSQFELVGVT 110

Query: 115 GTNGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFADK 174
           GTNGKT+ + L          K  ++ T+ N +  + + + +TT D ITL R L + AD+
Sbjct: 111 GTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADE 170

Query: 175 GVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAEAKQMLF-RFDSL 233
           G     MEVSSH + Q R+  + F   +FTNLTRDHLDYH  +ENY +AK+  F      
Sbjct: 171 GCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKN 230

Query: 234 LHGLVNLDDPVGAAWLSELANVPAKMWGFSIEAHTEVAFYTKNAQFNDQGVQATLVWPEG 293
              L NLDD  G   L    N  +K++ +S+ + ++       + F        ++    
Sbjct: 231 AFSLTNLDDKNG---LVMTQNTRSKVYTYSLRSLSDFKGRVIESHFEG------MLLDFN 281

Query: 294 EVDIRSPLLGAFNLSNLLAALSALYLQGMDMRALASKVPYLVPVAGRMERFTTADNITLV 353
             ++    +G FN SNLLA   A  L G     +   +  L PVAGR +   +   +T +
Sbjct: 282 NHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSPKGVTAI 341

Query: 354 VDYAHTPDAIEQALNALR--RHCAGELWCVFGCGGDRDKGKRPLMGQAAEQCADRIMVTS 411
           VDYAHTPDA+   LNA+       G++  V G GG+RDKGKRP+M + A + +DR+++TS
Sbjct: 342 VDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITS 401

Query: 412 DNARSEDPNQIITDIIQGLTHPE--RALTEVDRVAAIKHVVAQAKPGDVILLAGKGHETY 469
           DN R E+P +II D++ GL   +  + L+  DR  AI+     A+ GDVIL+AGKGHE Y
Sbjct: 402 DNPRFEEPQEIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENY 461

Query: 470 QEAAGVRHDYDERALARQL 488
           QE  GV+H +D++ + +++
Sbjct: 462 QEIKGVKHHFDDKEVLKEI 480