Pairwise Alignments

Query, 1767 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella sp. ANA-3

Subject, 1279 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  532 bits (1370), Expect = e-154
 Identities = 333/877 (37%), Positives = 494/877 (56%), Gaps = 45/877 (5%)

Query: 907  KALFDGSTIGIVNVDAKGVILDCNDQYCEDMGQTRESLCGVPIFDVLSLQ------DKET 960
            +A+FD + IGI+ +    +I  CN        +T E + G    ++L         D+ T
Sbjct: 405  QAVFDAARIGII-LTRDRIIRRCN--------RTIEEILGYEPGEILEQSTRIWYPDEAT 455

Query: 961  AKAQFRELAEGKVDH--YRGERSFIRPNGEPLWMTVNVSALFDSQKQFESAVVSMVDMTE 1018
              A    + EG   H  +R E   +R +G   W  + ++ + D     +    ++ D+ E
Sbjct: 456  FLAVGERVREGLTRHGYFREELELVRKDGSRFWGRI-MAQVIDRNAPEKGMAGTVEDIGE 514

Query: 1019 LKLLSDELLVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYV 1078
             + +  E+  AK  A+AA++AK DFLANMSHEIRTPMNA+IGM+ L L+T LD++Q+ Y+
Sbjct: 515  ERRILAEMAQAKALAEAAAQAKADFLANMSHEIRTPMNAVIGMTHLALKTDLDERQREYL 574

Query: 1079 EKIERASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELL 1138
             KI+ +S+ LL IINDILDFSK EAGKL IE + F L+ +LED+S + SE+A  K LE +
Sbjct: 575  RKIQHSSQHLLGIINDILDFSKSEAGKLHIEQIDFDLEKVLEDVSSLMSERATSKGLEFV 634

Query: 1139 FAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQNDDVVLRFSVRD 1198
              +A  VPRHL GD LR+GQVLIN  +NA+KFTERGEV + + L E Q  +V+LRF+V D
Sbjct: 635  IEMADEVPRHLVGDPLRIGQVLINYASNAVKFTERGEVAIHVGLEEDQGQEVLLRFAVHD 694

Query: 1199 SGIGLTADQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGST 1258
            +GIG+ A +   LF SF QAD+STTRKYGGTGLGL I K+L ELMGG +G ES+ G GST
Sbjct: 695  TGIGIKAGELPTLFNSFQQADSSTTRKYGGTGLGLVIAKRLAELMGGQVGAESEPGRGST 754

Query: 1259 FYFTVKLQISSG--QKLTVAQELEGMPILVADDNATARDIMRTTLESMGFRVDTVRSGEE 1316
            F+FT +L  SS    +     +L    +LV DD+  ARD++   L SM F+V    SG  
Sbjct: 755  FWFTARLGRSSNARHRAPPRPDLRTRRLLVVDDHDHARDVVCDMLRSMSFQVSDTDSGNR 814

Query: 1317 AVTR-----CIQQEYAVALIDWKMPNLDGIETAKQIKQ-QAKKAPRILMVSAHANQDFLS 1370
             +          + Y +  +DW+MP +DG+ TA++I++ +  + P +LM++A+   +   
Sbjct: 815  CLAELQRASAAGEPYDIVFLDWQMPEMDGLATAREIRRLELPQPPLVLMITAYGRDELAR 874

Query: 1371 QIEELGLAG---YISKPISASRLLDGIINSLGRAGVLPVRRQSESIDPKLLLPLKGKRIL 1427
               E GL G    + KP+S S+L + ++  L            E++    L PL G R+L
Sbjct: 875  SAGESGLQGIEEILIKPVSPSQLFNTVMRILDHEDGPHSAADPEALPD--LAPLAGLRVL 932

Query: 1428 LVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLEQQSFDLVLMDCQMPVMDGYQATQ 1487
            LVEDN++N EVA+EFL    +++ +A +G  AL+K+ QQ +D++LMD QMPVMDG  AT+
Sbjct: 933  LVEDNQLNQEVASEFLAGANMVVDVADDGASALEKVRQQRYDVILMDMQMPVMDGIAATR 992

Query: 1488 ALRKRPELTELPVVAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYLGGSASL 1547
             +R++     LP++AMTANAM  D+E CL AGMNDHIAKP++   L   LLK+L   A L
Sbjct: 993  EIRRQFPAAVLPILAMTANAMEQDRERCLAAGMNDHIAKPVDPRDLLGKLLKWLAPGAPL 1052

Query: 1548 V--DNTEPSQLVDIPVKPINLDSESVVK-WPEHPELDIDRGLQLVQNSTRLYQRSFDRFV 1604
            V      P      P  P+   +++  + +   P LD   GL    +   LY R  D+FV
Sbjct: 1053 VAPQAAAPLPGTVTPTPPVAAPAKADRQPFAGIPGLDATLGLHQALDREGLYLRLMDKFV 1112

Query: 1605 TSQRNVVDLINKALANDKRDDAVRMAHTLKGLAGNLSSSKLVELARQLELHLSEKSEYQT 1664
            + QR+    + +A+       A R AHTLKG++  + +  L +LA  LE  + ++     
Sbjct: 1113 SGQRDAPQRLARAIDAGDWVGAEREAHTLKGVSAQIGAMPLRDLAEGLEHAIRQRD---- 1168

Query: 1665 ELDQIQALVASICDAIERVKPQFEESTTSTSEQLSPEALVTALK------QLRQSLEDAD 1718
              D +Q L+  I D++  +      +  +T E  + +A V  ++      +L Q L + D
Sbjct: 1169 PPDLLQDLLGKIADSLPPLVDAI-AAVLATQEVPAAKATVNWMQVEEVCARLAQQLANDD 1227

Query: 1719 SDAVAQIDALKPQVSSKLWLQLSPALTMINQYQFDEA 1755
                  +D  +  +   L     P    +  + F +A
Sbjct: 1228 FACEKLLDEHEALLHGALGEDFPPLARAVRDFDFTQA 1264



 Score = 48.5 bits (114), Expect = 5e-09
 Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 13/171 (7%)

Query: 222 DQGRLIFHSDKEKVLAVTSAEWLDRNTRRNSDFWTLLD---KGLNGQARFIDDKSTVYLA 278
           DQG     +D  +VL    A  ++           LLD   KG  G  + +D K    ++
Sbjct: 216 DQGIFAASTDPTRVLEKLPAPGIN----------PLLDRRLKGYTGPGQTVDSKGLEVVS 265

Query: 279 SVASVAKLKWRVIVMVPEHQLFATLLDDVASVVLNLSLLTLLLLLTCYIAAKRLTRPLEA 338
           + A V    W V+  +P  + FA        +    +L+TLL+ L  ++  +R   PLE 
Sbjct: 266 AAAMVPTANWMVVSYLPTREAFAPQERATMRIYSGAALITLLVALLVWLGVRRSLAPLER 325

Query: 339 LESGILAFGQGKAQQLAIPKGAVSEIVTLSSTFNQMAELLGEREQAILDSR 389
               I   G G      +      EI  L   FN + + +  + + I   R
Sbjct: 326 AARQIGETGAGHIPLEPVEVQGSGEIRMLLQNFNLLQQHIAAQNETIRQER 376