Pairwise Alignments

Query, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

Subject, 193 a.a., RNA polymerase sigma-H factor AlgT from Pseudomonas fluorescens FW300-N2E2

 Score = 67.4 bits (163), Expect = 2e-16
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 4/189 (2%)

Query: 12  EHTDEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAA 71
           +  D+QL++R  +GD +AF+ L LK++  +    VR + D   A+D+ QE + +  RA  
Sbjct: 4   QEEDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALG 63

Query: 72  NYEPSAKFNTWLYRIAHNLLIDHV--RAVKPVDL-VSHDNEEGLDTFVGAEQ-EQPDVHW 127
           N+   + F TWLYRIA N   +++  R  +P D  VS ++ E  D   G +  E P+   
Sbjct: 64  NFRGDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERAL 123

Query: 128 QETQKSLLLKTCIALLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIRYAYQSLK 187
              +    +   I  LP+  + A  L    G +   I+ +    +   +SRI  A +++ 
Sbjct: 124 LRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAID 183

Query: 188 DCVNAKWQE 196
             +    QE
Sbjct: 184 KALQPLLQE 192