Pairwise Alignments

Query, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

Subject, 176 a.a., RNA polymerase sigma-70 factor from Xanthomonas campestris pv. campestris strain 8004

 Score = 64.7 bits (156), Expect = 9e-16
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 17/168 (10%)

Query: 33  LYLKHKGALYRYFVRQL-GDKQLAEDLYQETWGRVIRAAANYEPS-AKFNTWLYRIAHNL 90
           L+ +H  AL+ +      G+   AEDL Q+TW +++   ++Y P  A F T+L++I  N 
Sbjct: 16  LFQRHNRALFNFLAWLCEGNLSEAEDLAQKTWVKLMTRCSDYRPGQAAFTTFLFQIGRNA 75

Query: 91  LIDHVRAVKPVDLVSHDNEEGLDTFVGAEQEQPDVHWQETQKSLL------LKTCIALLP 144
            ID  R+        H     LD    A  + PD      Q ++L      ++  +  LP
Sbjct: 76  WIDTRRSAH------HTTSTALDE---AHLQLPDQELSGEQLAMLGQQQHRVRAAVMALP 126

Query: 145 QVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIRYAYQSLKDCVNA 192
             Q+E  +L          I+ + G   E  KSR+RYA+  L+  ++A
Sbjct: 127 DAQREVVVLRFFAELGVEEIAHVVGEGFETVKSRLRYAFAKLRVSLDA 174