Pairwise Alignments

Query, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

Subject, 193 a.a., RNA polymerase, sigma-24 subunit, RpoE from Pseudomonas syringae pv. syringae B728a

 Score = 67.8 bits (164), Expect = 1e-16
 Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 14/194 (7%)

Query: 12  EHTDEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAA 71
           +  D+QL++R  +GD +AF+ L LK++  +    VR + D   A+D+ QE + +  RA  
Sbjct: 4   QEEDQQLVERVQRGDTRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALG 63

Query: 72  NYEPSAKFNTWLYRI----AHNLLIDHVRA-----VKPVDLVSHDNEEGLDTFVGAEQEQ 122
           N+   + F TWLYRI    A N L+   R      V+  D   +D + GL      + E 
Sbjct: 64  NFRGDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVRSEDAEFYDGDHGL-----KDIES 118

Query: 123 PDVHWQETQKSLLLKTCIALLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIRYA 182
           P+      +    +   I LLP+  + A  L    G +   I+ +    +   +SRI  A
Sbjct: 119 PERALLRDEIEGTVHRTIQLLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRA 178

Query: 183 YQSLKDCVNAKWQE 196
            +++   +    QE
Sbjct: 179 REAIDKALQPLLQE 192