Pairwise Alignments

Query, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

Subject, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

 Score = 65.9 bits (159), Expect = 4e-16
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 11/151 (7%)

Query: 41  LYRYFVRQLGDKQLAEDLYQETWGRVIRAAANYEPSAKFNTWLYRIAHNLLIDHVRAVKP 100
           L R+ +   G + +A+DL Q    R + +A  +EP  +F+ W++RI  NL ID VR  K 
Sbjct: 19  LRRFAISLCGSRDVADDLVQSACERALASAERFEPGTRFDAWIFRILRNLWIDQVRRQKT 78

Query: 101 VDLVSHDNEEGLDTFVGAEQEQPDVHWQETQKSLLLKT---CIALLPQVQKEAFILNIEM 157
              V  D  E  D   G+  E      +ET+  L LKT    I  LP  Q+E  +L    
Sbjct: 79  AG-VQDDITERHD-IAGSSGE------RETEARLTLKTVAEAITELPDEQREVVLLVCVE 130

Query: 158 GFTAAVISDIAGVTLEATKSRIRYAYQSLKD 188
             +    +D+ G+ +    SR+  A +SL +
Sbjct: 131 ELSYREAADVMGIPIGTVMSRLMRARRSLAE 161