Pairwise Alignments

Query, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

Subject, 203 a.a., sigma-70 family RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 73.6 bits (179), Expect = 2e-18
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 5/179 (2%)

Query: 10  AHEHTDEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRA 69
           A   +DE L+   A GD  A   LY +H   +YR+ +R + D   AEDL  + +  V R 
Sbjct: 18  ARATSDEMLLASIANGDRTAMHTLYARHNVRVYRFILRMVRDAATAEDLVSQVFLDVWRT 77

Query: 70  AANYEPSAKFNTWLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGAEQEQPDVHWQE 129
           A  +E  A+ +TWL  IA    +  +R  +  D+   D ++ L+   G+  + P+     
Sbjct: 78  ARQFEGRAQVSTWLLSIARFKALTALRQRQHEDI---DQDDVLEIADGS--DSPETALDR 132

Query: 130 TQKSLLLKTCIALLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIRYAYQSLKD 188
           ++ S +L+ CIA L    +E   L      +   +  I G+     K+R+ YA + L +
Sbjct: 133 SRTSDILRACIAKLSPAHREIINLVYYHEKSVEEVGRIVGIPQSTVKTRMFYARKQLAE 191