Pairwise Alignments

Query, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

Subject, 189 a.a., sigma-70 family RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 70.9 bits (172), Expect = 1e-17
 Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 5/179 (2%)

Query: 14  TDEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAANY 73
           TD+ L+ R A+GD  A + LY +H   ++R+ +R + ++Q+AEDL  E +  V R A  +
Sbjct: 8   TDDVLIARIAQGDRVAMQVLYGRHHVKVFRFGLRLVRNEQIAEDLISEVFLDVWRQAGKF 67

Query: 74  EPSAKFNTWLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGAEQEQPDVHWQETQKS 133
           E  +  +TWL  I     +  +R  K  +L   D+E      +    + P++  Q+    
Sbjct: 68  EGRSSVSTWLLAITRFKALSALRRRKDAEL---DDEAA--AAIEDPSDDPEIAVQKKDTG 122

Query: 134 LLLKTCIALLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIRYAYQSLKDCVNA 192
             L+ C++ L    +E   L      +   +++I G+     K+R+ YA + L D + A
Sbjct: 123 EALRKCLSSLTPEHREIVDLVYYHEKSIEEVAEIVGIPENTVKTRLFYARKKLADLLQA 181